Wall clock time and date at job start Mon Mar 30 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 113.99794 * 2 1 4 4 C 1.34777 * 119.99986 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00040 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99707 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47020 * 179.97438 * 6 4 3 8 8 C 1.36935 * 120.00440 * 270.00278 * 7 6 4 9 9 H 1.07999 * 120.00436 * 192.63149 * 8 7 6 10 10 C 1.38814 * 119.99720 * 12.62464 * 8 7 6 11 11 N 1.31626 * 120.00104 * 25.31795 * 10 8 7 12 12 Si 1.86797 * 120.00156 * 205.31137 * 10 8 7 13 13 H 1.48503 * 109.47290 * 90.00198 * 12 10 8 14 14 H 1.48503 * 109.47522 * 210.00411 * 12 10 8 15 15 H 1.48499 * 109.47142 * 330.00361 * 12 10 8 16 16 C 1.46501 * 119.99903 * 89.99983 * 7 6 4 17 17 C 1.52997 * 117.50186 * 194.07762 * 16 7 6 18 18 C 1.52995 * 60.00472 * 252.51159 * 17 16 7 19 19 H 1.08999 * 109.46569 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46866 * 299.99931 * 1 2 3 21 21 H 1.08995 * 109.47035 * 59.99995 * 1 2 3 22 22 H 0.97000 * 120.00368 * 359.97438 * 3 2 1 23 23 H 1.09002 * 109.47451 * 60.00182 * 6 4 3 24 24 H 1.08995 * 109.47917 * 299.99766 * 6 4 3 25 25 H 0.96989 * 119.99895 * 175.07102 * 11 10 8 26 26 H 1.09001 * 115.55043 * 339.78974 * 16 7 6 27 27 H 1.09001 * 117.49706 * 0.02562 * 17 16 7 28 28 H 1.08999 * 117.49556 * 145.01671 * 17 16 7 29 29 H 1.09001 * 117.50278 * 252.51271 * 18 17 16 30 30 H 1.09004 * 117.51528 * 107.47399 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.3453 1.4345 -0.0005 5 8 4.0582 0.4534 -0.0005 6 6 3.9582 2.8113 -0.0011 7 7 5.4186 2.6957 -0.0010 8 6 6.1012 2.6422 1.1849 9 1 7.1744 2.7624 1.1962 10 6 5.4136 2.4335 2.3726 11 7 4.2544 1.8101 2.3612 12 14 6.1335 3.0371 3.9871 13 1 5.6672 4.4223 4.2499 14 1 5.6897 2.1477 5.0904 15 1 7.6162 3.0212 3.9046 16 6 6.1489 2.6374 -1.2697 17 6 7.6114 2.1905 -1.2231 18 6 7.2679 3.6576 -1.4883 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.4348 2.0784 -0.0004 23 1 3.6369 3.3525 0.8889 24 1 3.6363 3.3520 -0.8910 25 1 3.8080 1.6009 3.1965 26 1 5.5597 2.3428 -2.1381 27 1 8.0301 1.9395 -0.2486 28 1 7.9845 1.6016 -2.0610 29 1 7.4151 4.0341 -2.5006 30 1 7.4605 4.3725 -0.6882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308447231.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:37 Heat of formation + Delta-G solvation = 11.579648 kcal Electronic energy + Delta-G solvation = -14881.360905 eV Core-core repulsion = 12294.572443 eV Total energy + Delta-G solvation = -2586.788462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02164 -38.58762 -37.53869 -35.19708 -33.01479 -32.24820 -28.52206 -27.09700 -25.53982 -22.96270 -21.86012 -21.40162 -19.08492 -18.04403 -17.61500 -17.39313 -16.24020 -16.08757 -15.70994 -15.19017 -14.76692 -14.63792 -14.07718 -13.58498 -13.14415 -12.85843 -12.70376 -12.37594 -12.25770 -12.12186 -11.96757 -11.76437 -11.68000 -10.99011 -10.45272 -10.32370 -9.45888 -8.71702 -7.89364 -5.17804 1.38253 1.48539 1.49574 1.57886 2.43822 2.59501 3.13770 3.40850 3.48624 4.11662 4.28926 4.34072 4.45243 4.47122 4.51442 4.55422 4.72516 4.89625 4.94350 5.00002 5.17699 5.33568 5.53673 5.71515 6.25121 6.29294 6.90228 7.12180 7.80610 8.08674 8.22244 9.16552 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.012675 C = 0.008938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.316089 B = 2208.481065 C = 3131.848511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.206 6.206 3 N -0.601 5.601 4 C 0.534 3.466 5 O -0.573 6.573 6 C 0.180 3.820 7 N -0.550 5.550 8 C -0.262 4.262 9 H 0.078 0.922 10 C -0.048 4.048 11 N -0.914 5.914 12 Si 0.968 3.032 13 H -0.277 1.277 14 H -0.304 1.304 15 H -0.277 1.277 16 C 0.098 3.902 17 C -0.209 4.209 18 C -0.185 4.185 19 H 0.116 0.884 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.410 0.590 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.247 0.753 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 4.735 -6.452 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.208 6.208 3 N -0.311 5.311 4 C 0.321 3.679 5 O -0.448 6.448 6 C 0.049 3.951 7 N -0.266 5.266 8 C -0.392 4.392 9 H 0.096 0.904 10 C -0.243 4.243 11 N -0.559 5.559 12 Si 0.798 3.202 13 H -0.203 1.203 14 H -0.232 1.232 15 H -0.203 1.203 16 C -0.010 4.010 17 C -0.247 4.247 18 C -0.225 4.225 19 H 0.134 0.866 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.251 0.749 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.596 3.841 -6.300 9.261 hybrid contribution -0.329 -0.114 1.351 1.395 sum -5.925 3.727 -4.950 8.573 Atomic orbital electron populations 1.23379 0.79363 1.05092 1.01848 1.90528 1.21943 1.10858 1.97457 1.48178 1.05507 0.96933 1.80437 1.22936 0.78563 0.94286 0.72068 1.90492 1.61453 1.42166 1.50710 1.20650 0.82869 0.89623 1.01944 1.43830 1.00966 1.80644 1.01188 1.19408 0.92588 1.43203 0.83988 0.90445 1.25497 0.98282 0.99830 1.00739 1.69988 1.19095 1.41216 1.25614 0.85245 0.77840 0.77839 0.79296 1.20297 1.23194 1.20273 1.21296 0.88129 1.02431 0.89182 1.23136 1.00990 0.98809 1.01799 1.23362 1.05384 0.91465 1.02291 0.86564 0.92512 0.91240 0.74899 0.89294 0.88882 0.94315 0.87670 0.91270 0.88220 0.86775 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 11.30 113.37 1.28 1.28 16 2 O -0.21 -8.40 11.47 -21.39 -0.25 -8.65 16 3 N -0.60 -24.13 6.39 -173.54 -1.11 -25.23 16 4 C 0.53 26.36 5.93 87.66 0.52 26.88 16 5 O -0.57 -35.21 16.26 14.37 0.23 -34.97 16 6 C 0.18 8.04 5.48 85.63 0.47 8.51 16 7 N -0.55 -27.11 2.38 -682.33 -1.62 -28.73 16 8 C -0.26 -14.31 8.89 84.03 0.75 -13.56 16 9 H 0.08 4.22 6.27 -2.91 -0.02 4.20 16 10 C -0.05 -2.64 4.83 84.86 0.41 -2.23 16 11 N -0.91 -52.95 8.85 21.65 0.19 -52.76 16 12 Si 0.97 45.24 29.63 68.60 2.03 47.27 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C 0.10 4.08 6.60 44.99 0.30 4.38 16 17 C -0.21 -8.22 9.77 30.59 0.30 -7.93 16 18 C -0.18 -6.40 10.13 30.60 0.31 -6.09 16 19 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 20 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.41 12.45 8.54 -92.71 -0.79 11.66 16 23 H 0.09 4.16 6.61 -2.39 -0.02 4.14 16 24 H 0.09 3.23 8.07 -2.39 -0.02 3.21 16 25 H 0.25 14.29 8.32 -92.72 -0.77 13.52 16 26 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 27 H 0.07 3.12 6.44 -2.39 -0.02 3.10 16 28 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -75.33 260.48 4.17 -71.16 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.35 Total: 20.66 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.33 Total: 11.24 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -2.54 Total: -106.72 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.01 Total: -43.62 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.33 4.17 -71.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308447231.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.742 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds