Wall clock time and date at job start Mon Mar 30 2020 02:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 13 13 C 1.53002 * 109.46817 * 60.00361 * 12 2 1 14 14 H 1.09001 * 115.71754 * 330.57965 * 13 12 2 15 15 O 1.42901 * 117.77383 * 117.53087 * 13 12 2 16 16 C 1.43073 * 64.69133 * 106.86397 * 15 13 12 17 17 C 1.53003 * 117.80777 * 253.18712 * 16 15 13 18 18 C 1.53002 * 117.76073 * 106.83493 * 16 15 13 19 19 O 1.42893 * 109.46962 * 119.02495 * 18 16 15 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 28 28 H 1.08996 * 109.46952 * 300.00302 * 12 2 1 29 29 H 1.09000 * 109.46950 * 125.98681 * 17 16 15 30 30 H 1.08997 * 109.46928 * 245.98997 * 17 16 15 31 31 H 1.09000 * 109.46885 * 5.98920 * 17 16 15 32 32 H 1.09000 * 109.47488 * 239.02932 * 18 16 15 33 33 H 1.09003 * 109.46432 * 359.02831 * 18 16 15 34 34 H 0.96706 * 113.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5866 4.8165 12 6 2.0401 -0.7213 -1.2492 13 6 1.5301 0.0001 -2.4984 14 1 0.5753 0.5148 -2.3907 15 8 2.4991 0.5717 -3.3795 16 6 1.8592 -0.6142 -3.8606 17 6 2.6759 -1.9079 -3.8807 18 6 0.8264 -0.4629 -4.9792 19 8 1.2577 -1.1952 -6.1279 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 0.7094 1.1618 3.4844 27 1 3.1301 -0.7217 -1.2490 28 1 1.6767 -1.7489 -1.2492 29 1 2.1375 -2.6858 -3.3394 30 1 2.8308 -2.2237 -4.9124 31 1 3.6412 -1.7356 -3.4046 32 1 -0.1348 -0.8502 -4.6411 33 1 0.7228 0.5909 -5.2378 34 1 0.6497 -1.1437 -6.8782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379367332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:03 Heat of formation + Delta-G solvation = -73.880146 kcal Electronic energy + Delta-G solvation = -14982.675572 eV Core-core repulsion = 12495.721639 eV Total energy + Delta-G solvation = -2486.953933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36163 -36.67125 -35.82038 -31.64213 -30.41158 -27.28479 -26.69374 -25.60672 -25.22394 -22.56977 -19.70804 -18.16376 -17.44132 -16.21576 -15.64597 -15.24376 -14.59895 -14.37642 -13.79681 -13.30923 -12.88977 -12.61258 -12.31441 -12.13727 -11.83498 -11.27708 -11.20041 -10.92449 -10.62324 -10.50517 -10.31159 -10.18194 -10.10240 -9.82466 -9.59948 -9.36910 -8.87604 -8.59169 -8.31298 -5.93730 -4.03890 3.29957 3.38465 3.42117 3.68186 4.15742 4.44022 4.67647 5.05039 5.13558 5.18500 5.32171 5.48518 5.66991 5.93586 6.01659 6.07275 6.29443 6.45645 6.49700 6.62112 6.77621 6.93826 7.03783 7.13527 7.23024 7.45960 7.52375 7.69047 7.77984 8.13276 8.25198 8.50655 8.97186 9.61437 11.07242 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056062 B = 0.007118 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.328155 B = 3932.660165 C = 4097.422796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.091 4.091 13 C 0.025 3.975 14 H 0.121 0.879 15 O -0.354 6.354 16 C -0.010 4.010 17 C -0.119 4.119 18 C 0.103 3.897 19 O -0.567 6.567 20 H 0.008 0.992 21 H 0.026 0.974 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.007 0.993 26 H 0.258 0.742 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -3.149 -11.401 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.066 3.934 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.073 0.927 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.128 4.128 13 C -0.031 4.031 14 H 0.138 0.862 15 O -0.275 6.275 16 C -0.050 4.050 17 C -0.176 4.176 18 C 0.025 3.975 19 O -0.372 6.372 20 H 0.027 0.973 21 H 0.045 0.955 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.042 0.958 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.712 -2.911 -10.913 11.424 hybrid contribution -0.064 -0.021 0.490 0.494 sum -1.776 -2.932 -10.423 10.973 Atomic orbital electron populations 1.21900 0.98180 0.98925 1.00088 1.18093 0.92331 0.92442 0.90532 1.21819 0.98370 0.98601 0.99963 1.21150 1.30969 1.11822 0.90241 0.92681 1.24912 0.95027 0.94960 0.98804 1.69827 1.37015 1.22844 1.22906 0.86582 0.78619 0.79740 0.83311 1.19875 1.21130 1.21117 1.21692 1.00433 0.98427 0.92282 1.24479 0.94005 0.96773 0.87874 0.86163 1.91677 1.56763 1.40125 1.38968 1.22651 0.98610 0.88594 0.95109 1.21375 0.99409 0.93903 1.02934 1.21815 0.95186 0.95406 0.85132 1.86472 1.51635 1.74379 1.24734 0.97341 0.95492 0.89774 0.89978 0.95784 0.97357 0.93186 0.92149 0.91432 0.91109 0.90745 0.91761 0.91814 0.92796 0.77502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.01 37.16 0.30 -2.78 16 2 C 0.07 1.60 0.52 -155.66 -0.08 1.52 16 3 C -0.13 -3.21 8.01 37.16 0.30 -2.91 16 4 C -0.50 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -24.42 9.35 55.43 0.52 -23.90 16 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C -0.09 -1.90 3.71 -26.73 -0.10 -2.00 16 13 C 0.03 0.47 4.85 -26.73 -0.13 0.34 16 14 H 0.12 2.18 6.07 -51.93 -0.32 1.86 16 15 O -0.35 -7.20 14.38 -35.23 -0.51 -7.71 16 16 C -0.01 -0.17 3.22 -90.62 -0.29 -0.46 16 17 C -0.12 -1.81 8.91 37.16 0.33 -1.48 16 18 C 0.10 1.32 7.36 37.16 0.27 1.60 16 19 O -0.57 -6.66 12.07 -35.23 -0.43 -7.09 16 20 H 0.01 0.16 6.15 -51.93 -0.32 -0.16 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 23 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.01 0.17 7.21 -51.93 -0.37 -0.20 16 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.07 1.33 7.89 -51.93 -0.41 0.92 16 29 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 30 H 0.07 1.06 6.78 -51.93 -0.35 0.71 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 34 H 0.38 2.42 9.12 45.56 0.42 2.83 16 LS Contribution 272.58 15.07 4.11 4.11 Total: -1.00 -29.84 272.58 -5.57 -35.41 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.47 Total: 1.49 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 0.23 Total: -18.30 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.52 Total: -23.90 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.93 Total: -14.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.84 -5.57 -35.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.472 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds