Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47531 * 2 1 4 4 C 1.50703 * 109.47047 * 120.00362 * 2 1 3 5 5 H 1.07996 * 120.00410 * 121.32878 * 4 2 1 6 6 C 1.37881 * 119.99875 * 301.32420 * 4 2 1 7 7 N 1.31512 * 120.00224 * 193.99857 * 6 4 2 8 8 Si 1.86800 * 119.99654 * 14.00109 * 6 4 2 9 9 H 1.48504 * 109.47254 * 84.54741 * 8 6 4 10 10 H 1.48500 * 109.47250 * 204.54311 * 8 6 4 11 11 H 1.48500 * 109.47297 * 324.54532 * 8 6 4 12 12 C 1.53009 * 109.47018 * 239.99777 * 2 1 3 13 13 C 1.52993 * 109.46852 * 60.00366 * 12 2 1 14 14 H 1.08998 * 115.71860 * 331.94327 * 13 12 2 15 15 O 1.42903 * 117.77350 * 118.98276 * 13 12 2 16 16 C 1.42908 * 64.73269 * 106.84199 * 15 13 12 17 17 C 1.52999 * 117.77224 * 106.84258 * 16 15 13 18 18 C 1.53003 * 117.81491 * 253.18236 * 16 15 13 19 19 O 1.42898 * 109.47379 * 246.03121 * 18 16 15 20 20 H 1.08996 * 109.46976 * 59.99626 * 1 2 3 21 21 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46662 * 300.00501 * 1 2 3 23 23 H 1.08993 * 109.46799 * 69.38138 * 3 2 1 24 24 H 1.09004 * 109.47216 * 189.38366 * 3 2 1 25 25 H 1.08994 * 109.46976 * 309.38108 * 3 2 1 26 26 H 0.97004 * 119.99725 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.46918 * 180.02562 * 12 2 1 28 28 H 1.09001 * 109.46796 * 300.00175 * 12 2 1 29 29 H 1.08997 * 109.46904 * 353.98608 * 17 16 15 30 30 H 1.09001 * 109.46716 * 113.98390 * 17 16 15 31 31 H 1.09001 * 109.46743 * 233.98253 * 17 16 15 32 32 H 1.09004 * 109.47245 * 6.03723 * 18 16 15 33 33 H 1.09004 * 109.46914 * 126.03068 * 18 16 15 34 34 H 0.96696 * 114.00137 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6708 -1.5759 1.1315 6 6 1.6768 -0.2556 2.4826 7 7 2.3189 -0.6875 3.5459 8 14 0.2829 0.9740 2.6685 9 1 -1.0133 0.2506 2.7089 10 1 0.4623 1.7388 3.9287 11 1 0.2916 1.9102 1.5158 12 6 2.0400 -0.7213 -1.2493 13 6 1.5300 -0.0001 -2.4985 14 1 0.5867 0.5340 -2.3843 15 8 2.5000 0.5439 -3.3959 16 6 1.8317 -0.6312 -3.8592 17 6 0.7894 -0.4685 -4.9674 18 6 2.6217 -1.9413 -3.8780 19 8 2.8016 -2.3698 -5.2293 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8200 1.9056 0.9618 24 1 3.1171 1.4470 -0.1676 25 1 1.5465 2.0023 -0.7943 26 1 2.0685 -0.3677 4.4268 27 1 3.1299 -0.7217 -1.2490 28 1 1.6766 -1.7490 -1.2492 29 1 0.6387 0.5915 -5.1716 30 1 1.1396 -0.9665 -5.8715 31 1 -0.1526 -0.9146 -4.6484 32 1 3.5955 -1.7851 -3.4136 33 1 2.0736 -2.7041 -3.3249 34 1 3.2953 -3.1966 -5.3174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379367341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = -54.492657 kcal Electronic energy + Delta-G solvation = -15093.992336 eV Core-core repulsion = 12607.879107 eV Total energy + Delta-G solvation = -2486.113229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53170 -36.66318 -36.25663 -31.90441 -30.53582 -28.32369 -26.45487 -26.29924 -25.06408 -22.84012 -19.79981 -18.56244 -17.48996 -16.09085 -15.84532 -15.44993 -15.23851 -14.48141 -13.81555 -13.28575 -13.09172 -12.84351 -12.77557 -12.56081 -12.08373 -12.04834 -11.91986 -11.07679 -11.01910 -10.49880 -10.31931 -10.20819 -10.05869 -9.87706 -9.86010 -9.30490 -8.95098 -8.59208 -8.39740 -6.11532 -4.07568 3.28059 3.36467 3.42038 3.56532 4.12758 4.40188 4.55725 4.95745 4.99993 5.17234 5.20986 5.47896 5.59942 5.65329 5.81376 5.91626 6.00774 6.10472 6.20348 6.28822 6.32758 6.52539 6.56712 6.72646 6.75848 6.84172 7.00295 7.31627 7.52953 7.54847 7.79666 8.49892 8.92885 9.54218 11.01799 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050005 B = 0.008118 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.811599 B = 3448.472745 C = 3675.606866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.040 3.960 3 C -0.141 4.141 4 C -0.512 4.512 5 H 0.073 0.927 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.248 1.248 12 C -0.085 4.085 13 C 0.017 3.983 14 H 0.124 0.876 15 O -0.351 6.351 16 C -0.004 4.004 17 C -0.123 4.123 18 C 0.101 3.899 19 O -0.571 6.571 20 H 0.032 0.968 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -1.749 -13.152 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 C -0.198 4.198 4 C -0.550 4.550 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.716 3.284 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.174 1.174 12 C -0.123 4.123 13 C -0.040 4.040 14 H 0.141 0.859 15 O -0.272 6.272 16 C -0.043 4.043 17 C -0.180 4.180 18 C 0.024 3.976 19 O -0.377 6.377 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.229 -0.942 -13.131 13.555 hybrid contribution -0.310 0.293 0.481 0.643 sum -3.538 -0.649 -12.651 13.152 Atomic orbital electron populations 1.22431 0.99036 1.00603 0.98667 1.18438 0.91241 0.92788 0.93596 1.22278 1.00052 0.97784 0.99697 1.20851 1.31237 1.14542 0.88336 0.90887 1.24999 0.96169 0.95834 0.95877 1.69960 1.39438 1.45125 0.98702 0.87321 0.82752 0.82308 0.76016 1.21376 1.23472 1.17392 1.21562 1.00954 0.98465 0.91296 1.24486 0.94350 0.97485 0.87673 0.85901 1.91667 1.55656 1.41184 1.38702 1.22614 0.97395 0.87150 0.97135 1.21439 0.96554 1.02380 0.97668 1.21832 0.98994 0.93635 0.83186 1.86420 1.79155 1.45383 1.26695 0.94891 0.92840 0.94203 0.92908 0.93716 0.95782 0.92681 0.91388 0.90824 0.92007 0.90345 0.91196 0.92270 0.91427 0.77298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 7.45 37.16 0.28 -2.83 16 2 C 0.04 0.90 0.52 -155.66 -0.08 0.82 16 3 C -0.14 -3.13 7.42 37.16 0.28 -2.86 16 4 C -0.51 -13.85 8.62 -34.44 -0.30 -14.15 16 5 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 6 C 0.07 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 8 Si 0.88 21.62 22.79 -169.99 -3.87 17.74 16 9 H -0.29 -6.90 7.10 56.52 0.40 -6.49 16 10 H -0.31 -7.65 7.11 56.52 0.40 -7.25 16 11 H -0.25 -5.65 4.65 56.52 0.26 -5.38 16 12 C -0.09 -1.63 3.71 -26.73 -0.10 -1.73 16 13 C 0.02 0.28 5.04 -26.73 -0.13 0.15 16 14 H 0.12 2.01 6.06 -51.93 -0.31 1.69 16 15 O -0.35 -6.67 14.38 -35.23 -0.51 -7.18 16 16 C 0.00 -0.06 3.18 -90.62 -0.29 -0.34 16 17 C -0.12 -1.60 9.90 37.16 0.37 -1.23 16 18 C 0.10 1.35 6.37 37.16 0.24 1.58 16 19 O -0.57 -6.78 12.20 -35.23 -0.43 -7.21 16 20 H 0.03 0.58 6.15 -51.93 -0.32 0.26 16 21 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 23 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16 24 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 25 H 0.02 0.48 7.52 -51.93 -0.39 0.09 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 28 H 0.07 1.31 7.82 -51.93 -0.41 0.90 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.00 6.85 -51.93 -0.36 0.64 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.79 7.88 -51.93 -0.41 0.39 16 34 H 0.38 2.62 9.12 45.56 0.42 3.04 16 LS Contribution 262.77 15.07 3.96 3.96 Total: -1.00 -31.51 262.77 -4.26 -35.77 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.35 Total: 1.79 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 0.16 Total: -18.62 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.94 Total: -14.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.87 Total: 17.74 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.51 -4.26 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.718 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds