Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47531 * 2 1 4 4 C 1.50703 * 109.47047 * 120.00362 * 2 1 3 5 5 H 1.07996 * 120.00410 * 121.32878 * 4 2 1 6 6 C 1.37881 * 119.99875 * 301.32420 * 4 2 1 7 7 N 1.31512 * 120.00224 * 193.99857 * 6 4 2 8 8 Si 1.86800 * 119.99654 * 14.00109 * 6 4 2 9 9 H 1.48504 * 109.47254 * 84.54741 * 8 6 4 10 10 H 1.48500 * 109.47250 * 204.54311 * 8 6 4 11 11 H 1.48500 * 109.47297 * 324.54532 * 8 6 4 12 12 C 1.53009 * 109.47018 * 239.99777 * 2 1 3 13 13 C 1.52993 * 109.46852 * 60.00366 * 12 2 1 14 14 H 1.08998 * 115.71860 * 331.94327 * 13 12 2 15 15 O 1.42903 * 117.77350 * 118.98276 * 13 12 2 16 16 C 1.42908 * 64.73269 * 106.84199 * 15 13 12 17 17 C 1.52999 * 117.77224 * 106.84258 * 16 15 13 18 18 C 1.53003 * 117.81491 * 253.18236 * 16 15 13 19 19 O 1.42898 * 109.47379 * 246.03121 * 18 16 15 20 20 H 1.08996 * 109.46976 * 59.99626 * 1 2 3 21 21 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46662 * 300.00501 * 1 2 3 23 23 H 1.08993 * 109.46799 * 69.38138 * 3 2 1 24 24 H 1.09004 * 109.47216 * 189.38366 * 3 2 1 25 25 H 1.08994 * 109.46976 * 309.38108 * 3 2 1 26 26 H 0.97004 * 119.99725 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.46918 * 180.02562 * 12 2 1 28 28 H 1.09001 * 109.46796 * 300.00175 * 12 2 1 29 29 H 1.08997 * 109.46904 * 353.98608 * 17 16 15 30 30 H 1.09001 * 109.46716 * 113.98390 * 17 16 15 31 31 H 1.09001 * 109.46743 * 233.98253 * 17 16 15 32 32 H 1.09004 * 109.47245 * 6.03723 * 18 16 15 33 33 H 1.09004 * 109.46914 * 126.03068 * 18 16 15 34 34 H 0.96696 * 114.00137 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6708 -1.5759 1.1315 6 6 1.6768 -0.2556 2.4826 7 7 2.3189 -0.6875 3.5459 8 14 0.2829 0.9740 2.6685 9 1 -1.0133 0.2506 2.7089 10 1 0.4623 1.7388 3.9287 11 1 0.2916 1.9102 1.5158 12 6 2.0400 -0.7213 -1.2493 13 6 1.5300 -0.0001 -2.4985 14 1 0.5867 0.5340 -2.3843 15 8 2.5000 0.5439 -3.3959 16 6 1.8317 -0.6312 -3.8592 17 6 0.7894 -0.4685 -4.9674 18 6 2.6217 -1.9413 -3.8780 19 8 2.8016 -2.3698 -5.2293 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8200 1.9056 0.9618 24 1 3.1171 1.4470 -0.1676 25 1 1.5465 2.0023 -0.7943 26 1 2.0685 -0.3677 4.4268 27 1 3.1299 -0.7217 -1.2490 28 1 1.6766 -1.7490 -1.2492 29 1 0.6387 0.5915 -5.1716 30 1 1.1396 -0.9665 -5.8715 31 1 -0.1526 -0.9146 -4.6484 32 1 3.5955 -1.7851 -3.4136 33 1 2.0736 -2.7041 -3.3249 34 1 3.2953 -3.1966 -5.3174 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379367341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -79.686671 kcal Electronic energy + Delta-G solvation = -15095.084830 eV Core-core repulsion = 12607.879107 eV Total energy + Delta-G solvation = -2487.205723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.82967 -38.15488 -37.47433 -34.00694 -31.64190 -29.82455 -27.99277 -27.55264 -27.05224 -24.32527 -21.19408 -20.14647 -18.50978 -18.02964 -17.45985 -16.72738 -16.52108 -15.94832 -15.26379 -14.88372 -14.66012 -14.50955 -13.97140 -13.93249 -13.74324 -13.66154 -13.07562 -12.60605 -12.50959 -12.22667 -11.98693 -11.93511 -11.65685 -11.35554 -11.09653 -10.82160 -10.65245 -10.54192 -10.25141 -8.28791 -6.28055 1.35845 1.38925 1.49654 2.35673 2.36337 3.01720 3.08019 3.45587 3.73514 3.91320 4.08810 4.15771 4.30387 4.38769 4.51806 4.61182 4.64912 4.78509 4.86597 4.91824 4.98483 5.00364 5.04694 5.17279 5.23903 5.28403 5.32904 5.57642 5.76891 5.84120 6.35821 6.77029 6.85746 7.37290 8.88218 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050005 B = 0.008118 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.811599 B = 3448.472745 C = 3675.606866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.034 3.966 3 C -0.139 4.139 4 C -0.511 4.511 5 H 0.033 0.967 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.940 3.060 9 H -0.276 1.276 10 H -0.318 1.318 11 H -0.216 1.216 12 C -0.077 4.077 13 C 0.014 3.986 14 H 0.140 0.860 15 O -0.386 6.386 16 C 0.004 3.996 17 C -0.121 4.121 18 C 0.101 3.899 19 O -0.578 6.578 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.028 0.972 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.263 0.737 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -1.235 -15.293 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.033 3.967 3 C -0.197 4.197 4 C -0.549 4.549 5 H 0.052 0.948 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.248 1.248 11 H -0.140 1.140 12 C -0.114 4.114 13 C -0.042 4.042 14 H 0.157 0.843 15 O -0.307 6.307 16 C -0.035 4.035 17 C -0.178 4.178 18 C 0.023 3.977 19 O -0.387 6.387 20 H 0.089 0.911 21 H 0.079 0.921 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.191 -0.448 -15.317 16.179 hybrid contribution 0.427 0.017 1.075 1.157 sum -4.763 -0.431 -14.242 15.024 Atomic orbital electron populations 1.22366 0.96849 1.01645 0.99856 1.18456 0.92998 0.92549 0.92671 1.22226 0.99661 0.97875 0.99902 1.21209 1.29840 1.13320 0.90540 0.94824 1.25832 0.98607 0.98196 0.95536 1.70112 1.41703 1.47658 0.99326 0.86397 0.79634 0.80610 0.76368 1.20338 1.24772 1.14028 1.21372 0.99664 0.99123 0.91268 1.24318 0.94194 0.98381 0.87345 0.84305 1.91650 1.56541 1.42804 1.39750 1.23129 0.97104 0.86795 0.96423 1.21500 0.96698 1.02771 0.96836 1.21790 0.98438 0.93414 0.84094 1.86364 1.79717 1.47049 1.25618 0.91072 0.92118 0.95384 0.94106 0.94959 0.93088 0.92860 0.93450 0.89750 0.91931 0.90076 0.88884 0.93583 0.89616 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 7.45 71.98 0.54 -5.13 16 2 C 0.03 1.46 0.52 -52.93 -0.03 1.44 16 3 C -0.14 -5.94 7.42 71.98 0.53 -5.40 16 4 C -0.51 -28.04 8.62 25.60 0.22 -27.82 16 5 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 6 C 0.02 0.87 5.32 84.66 0.45 1.32 16 7 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 8 Si 0.94 44.05 22.79 68.60 1.56 45.61 16 9 H -0.28 -12.43 7.10 99.48 0.71 -11.72 16 10 H -0.32 -15.41 7.11 99.48 0.71 -14.70 16 11 H -0.22 -8.98 4.65 99.48 0.46 -8.52 16 12 C -0.08 -2.83 3.71 30.59 0.11 -2.72 16 13 C 0.01 0.44 5.04 30.59 0.15 0.59 16 14 H 0.14 3.91 6.06 -2.39 -0.01 3.90 16 15 O -0.39 -13.93 14.38 -148.98 -2.14 -16.08 16 16 C 0.00 0.12 3.18 -10.79 -0.03 0.08 16 17 C -0.12 -2.70 9.90 71.98 0.71 -1.99 16 18 C 0.10 2.46 6.37 71.98 0.46 2.92 16 19 O -0.58 -12.19 12.20 -148.98 -1.82 -14.01 16 20 H 0.07 2.14 6.15 -2.39 -0.01 2.12 16 21 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.03 1.12 2.25 -2.39 -0.01 1.12 16 23 H 0.04 1.81 4.30 -2.39 -0.01 1.80 16 24 H 0.03 1.41 8.12 -2.39 -0.02 1.39 16 25 H 0.05 1.88 7.52 -2.39 -0.02 1.86 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 28 H 0.08 2.87 7.82 -2.39 -0.02 2.85 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.79 6.85 -2.39 -0.02 1.77 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.78 7.88 -2.39 -0.02 1.76 16 34 H 0.40 4.47 9.12 -74.06 -0.68 3.80 16 Total: -1.00 -68.75 262.77 1.20 -67.56 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.17 Total: 12.46 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.12 Total: -36.72 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.30 Total: -58.82 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -3.96 Total: -30.09 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.56 Total: 45.61 kcal Total: -68.75 1.20 -67.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.129 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds