Wall clock time and date at job start Mon Mar 30 2020 02:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 C 1.50704 * 109.47246 * 239.99894 * 2 1 3 5 5 H 1.07997 * 120.00244 * 241.17253 * 4 2 1 6 6 C 1.37877 * 119.99653 * 61.17312 * 4 2 1 7 7 N 1.31516 * 119.99589 * 194.16984 * 6 4 2 8 8 Si 1.86802 * 120.00389 * 14.17341 * 6 4 2 9 9 H 1.48503 * 109.47057 * 84.48772 * 8 6 4 10 10 H 1.48493 * 109.47409 * 204.49106 * 8 6 4 11 11 H 1.48500 * 109.47105 * 324.48918 * 8 6 4 12 12 C 1.53001 * 109.47169 * 119.99991 * 2 1 3 13 13 C 1.53005 * 109.46971 * 299.99785 * 12 2 1 14 14 H 1.09000 * 115.73910 * 28.01382 * 13 12 2 15 15 O 1.43072 * 117.80352 * 240.98748 * 13 12 2 16 16 C 1.42903 * 64.69044 * 253.19132 * 15 13 12 17 17 C 1.53004 * 117.77445 * 253.13683 * 16 15 13 18 18 C 1.52995 * 117.77314 * 106.86958 * 16 15 13 19 19 O 1.42906 * 109.47132 * 117.52905 * 18 16 15 20 20 H 1.08998 * 109.47357 * 309.70919 * 1 2 3 21 21 H 1.09003 * 109.47178 * 69.70988 * 1 2 3 22 22 H 1.09008 * 109.47175 * 189.70797 * 1 2 3 23 23 H 1.08998 * 109.47487 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47221 * 299.99940 * 3 2 1 25 25 H 1.09002 * 109.47232 * 59.99762 * 3 2 1 26 26 H 0.97003 * 119.99403 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46852 * 180.02562 * 12 2 1 28 28 H 1.08997 * 109.47190 * 60.00538 * 12 2 1 29 29 H 1.08994 * 109.47151 * 247.47184 * 17 16 15 30 30 H 1.09006 * 109.46865 * 7.47071 * 17 16 15 31 31 H 1.08994 * 109.47430 * 127.46831 * 17 16 15 32 32 H 1.09005 * 109.47112 * 357.53721 * 18 16 15 33 33 H 1.08992 * 109.47428 * 237.52878 * 18 16 15 34 34 H 0.96694 * 114.00244 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6375 -1.5994 -1.1315 6 6 1.7193 -0.2254 -2.4826 7 7 1.9095 -0.9766 -3.5452 8 14 1.0251 1.4987 -2.6698 9 1 2.1397 2.4791 -2.7129 10 1 0.2424 1.5832 -3.9288 11 1 0.1414 1.8045 -1.5162 12 6 2.0400 -0.7212 1.2492 13 6 1.5300 0.0001 2.4985 14 1 0.5871 0.5349 2.3845 15 8 2.5005 0.5445 3.3977 16 6 1.8318 -0.6311 3.8592 17 6 0.7888 -0.4696 4.9670 18 6 2.6230 -1.9404 3.8780 19 8 2.7299 -2.4131 5.2224 20 1 -0.3634 0.6565 0.7905 21 1 -0.3634 0.3564 -0.9639 22 1 -0.3634 -1.0130 0.1733 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6889 -0.6355 -4.4260 27 1 3.1300 -0.7208 1.2494 28 1 1.6767 -1.7489 1.2492 29 1 1.1498 -0.9466 5.8781 30 1 0.6193 0.5907 5.1546 31 1 -0.1455 -0.9378 4.6575 32 1 3.6203 -1.7682 3.4732 33 1 2.1080 -2.6849 3.2710 34 1 3.2208 -3.2416 5.3102 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379367343.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:06 Heat of formation + Delta-G solvation = -80.137590 kcal Electronic energy + Delta-G solvation = -15095.256943 eV Core-core repulsion = 12608.031667 eV Total energy + Delta-G solvation = -2487.225276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.81444 -38.15226 -37.47416 -34.00685 -31.62790 -29.83882 -27.97819 -27.54679 -27.05053 -24.33675 -21.18840 -20.13609 -18.50494 -18.03399 -17.39330 -16.80374 -16.50323 -15.98492 -15.16660 -14.88738 -14.74031 -14.52457 -13.96958 -13.87179 -13.74113 -13.67815 -13.07063 -12.60946 -12.59230 -12.17320 -12.02975 -11.89510 -11.67125 -11.32661 -11.13084 -10.83336 -10.65183 -10.52156 -10.26976 -8.29448 -6.27896 1.34185 1.37317 1.47787 2.34583 2.37244 2.99806 3.07711 3.44759 3.73049 3.91316 4.10154 4.14439 4.30803 4.41771 4.51883 4.58609 4.62954 4.77693 4.84004 4.92759 4.98854 5.03613 5.06754 5.14434 5.21964 5.31356 5.33309 5.58323 5.76015 5.86542 6.35767 6.76920 6.85978 7.37076 8.87472 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050471 B = 0.008126 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.643532 B = 3445.032984 C = 3688.471388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.034 3.966 3 C -0.146 4.146 4 C -0.510 4.510 5 H 0.035 0.965 6 C 0.018 3.982 7 N -0.946 5.946 8 Si 0.934 3.066 9 H -0.290 1.290 10 H -0.313 1.313 11 H -0.210 1.210 12 C -0.076 4.076 13 C 0.013 3.987 14 H 0.139 0.861 15 O -0.385 6.385 16 C 0.005 3.995 17 C -0.120 4.120 18 C 0.101 3.899 19 O -0.577 6.577 20 H 0.059 0.941 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -0.303 15.297 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.033 3.967 3 C -0.203 4.203 4 C -0.548 4.548 5 H 0.054 0.946 6 C -0.179 4.179 7 N -0.586 5.586 8 Si 0.765 3.235 9 H -0.218 1.218 10 H -0.242 1.242 11 H -0.134 1.134 12 C -0.114 4.114 13 C -0.043 4.043 14 H 0.156 0.844 15 O -0.307 6.307 16 C -0.034 4.034 17 C -0.177 4.177 18 C 0.023 3.977 19 O -0.387 6.387 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.742 0.454 15.320 15.777 hybrid contribution 0.783 0.304 -1.071 1.361 sum -2.960 0.759 14.249 14.573 Atomic orbital electron populations 1.22274 0.96267 1.01167 1.00376 1.18474 0.93579 0.91962 0.92701 1.22315 1.00372 0.98295 0.99312 1.21205 1.32083 1.11040 0.90485 0.94644 1.25765 0.95643 1.00858 0.95611 1.70099 1.51160 1.37965 0.99334 0.86483 0.79299 0.80917 0.76803 1.21805 1.24230 1.13390 1.21373 0.99766 0.99044 0.91199 1.24318 0.94155 0.98436 0.87388 0.84399 1.91668 1.56552 1.42721 1.39755 1.23109 0.97075 0.86786 0.96444 1.21484 0.96667 1.02706 0.96885 1.21768 0.98533 0.93056 0.84361 1.86361 1.79675 1.46315 1.26317 0.92183 0.94276 0.92564 0.94287 0.95143 0.92293 0.92832 0.93222 0.89915 0.90094 0.91913 0.89011 0.93424 0.89859 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 7.38 71.98 0.53 -4.96 16 2 C 0.03 1.44 0.52 -52.93 -0.03 1.42 16 3 C -0.15 -6.14 7.45 71.98 0.54 -5.60 16 4 C -0.51 -27.92 8.62 25.60 0.22 -27.70 16 5 H 0.04 2.14 7.99 -2.91 -0.02 2.12 16 6 C 0.02 1.05 5.32 84.65 0.45 1.50 16 7 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 8 Si 0.93 44.42 22.79 68.60 1.56 45.98 16 9 H -0.29 -13.84 7.10 99.48 0.71 -13.13 16 10 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 11 H -0.21 -8.69 4.66 99.48 0.46 -8.23 16 12 C -0.08 -2.81 3.71 30.60 0.11 -2.69 16 13 C 0.01 0.42 4.87 30.60 0.15 0.57 16 14 H 0.14 3.93 6.22 -2.39 -0.01 3.91 16 15 O -0.39 -13.76 14.38 -148.98 -2.14 -15.90 16 16 C 0.00 0.13 3.20 -10.79 -0.03 0.09 16 17 C -0.12 -2.72 9.85 71.98 0.71 -2.01 16 18 C 0.10 2.46 6.44 71.98 0.46 2.92 16 19 O -0.58 -12.06 12.12 -148.98 -1.81 -13.87 16 20 H 0.06 1.87 6.54 -2.39 -0.02 1.86 16 21 H 0.04 1.60 4.31 -2.39 -0.01 1.59 16 22 H 0.06 2.02 8.12 -2.38 -0.02 2.00 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.03 1.32 2.26 -2.39 -0.01 1.31 16 25 H 0.06 2.15 7.18 -2.39 -0.02 2.13 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.05 1.97 8.13 -2.39 -0.02 1.95 16 28 H 0.08 2.86 7.70 -2.39 -0.02 2.84 16 29 H 0.08 1.80 6.83 -2.39 -0.02 1.79 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.26 8.13 -2.38 -0.02 1.24 16 33 H 0.08 1.78 7.71 -2.39 -0.02 1.76 16 34 H 0.40 4.41 9.12 -74.06 -0.68 3.74 16 Total: -1.00 -67.94 262.44 1.20 -66.74 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.17 Total: 11.85 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 3.11 Total: -36.46 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.30 Total: -58.34 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -3.95 Total: -29.77 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.56 Total: 45.98 kcal Total: -67.94 1.20 -66.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367343.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.394 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds