Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47487 * 2 1 4 4 C 1.50704 * 109.47347 * 120.00266 * 2 1 3 5 5 H 1.07996 * 120.00089 * 115.04104 * 4 2 1 6 6 C 1.37881 * 119.99497 * 295.31935 * 4 2 1 7 7 N 1.31510 * 119.99715 * 199.87163 * 6 4 2 8 8 Si 1.86803 * 120.00210 * 19.86974 * 6 4 2 9 9 H 1.48499 * 109.46676 * 84.63389 * 8 6 4 10 10 H 1.48493 * 109.47179 * 204.63426 * 8 6 4 11 11 H 1.48502 * 109.47126 * 324.63535 * 8 6 4 12 12 C 1.53006 * 109.47383 * 240.00116 * 2 1 3 13 13 C 1.52996 * 109.46912 * 59.99876 * 12 2 1 14 14 H 1.09003 * 115.71884 * 28.05975 * 13 12 2 15 15 O 1.42901 * 117.77232 * 241.01524 * 13 12 2 16 16 C 1.42891 * 64.73739 * 253.16259 * 15 13 12 17 17 C 1.53000 * 117.77552 * 106.84238 * 16 15 13 18 18 C 1.53009 * 117.77439 * 253.16173 * 16 15 13 19 19 O 1.42898 * 109.46795 * 246.01472 * 18 16 15 20 20 H 1.09000 * 109.47319 * 300.00230 * 1 2 3 21 21 H 1.09008 * 109.46801 * 59.99881 * 1 2 3 22 22 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47532 * 189.25924 * 3 2 1 24 24 H 1.08998 * 109.47102 * 309.26145 * 3 2 1 25 25 H 1.09001 * 109.47178 * 69.25861 * 3 2 1 26 26 H 0.97000 * 120.00076 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47591 * 180.02562 * 12 2 1 28 28 H 1.09000 * 109.47084 * 300.00160 * 12 2 1 29 29 H 1.09005 * 109.46462 * 353.98423 * 17 16 15 30 30 H 1.08996 * 109.47337 * 113.97995 * 17 16 15 31 31 H 1.08995 * 109.47213 * 233.98949 * 17 16 15 32 32 H 1.08994 * 109.46800 * 6.01769 * 18 16 15 33 33 H 1.09000 * 109.47184 * 126.01807 * 18 16 15 34 34 H 0.96705 * 113.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5856 -1.6329 1.1333 6 6 1.7807 -0.1858 2.4804 7 7 2.5158 -0.5522 3.5075 8 14 0.3956 1.0456 2.7150 9 1 -0.8847 0.3190 2.9101 10 1 0.6757 1.8842 3.9080 11 1 0.2949 1.9122 1.5133 12 6 2.0400 -0.7212 -1.2493 13 6 1.5300 0.0000 -2.4985 14 1 1.3410 1.0674 -2.3843 15 8 0.6939 -0.7331 -3.3959 16 6 2.0244 -0.4949 -3.8592 17 6 2.9953 -1.6773 -3.8781 18 6 2.2186 0.5421 -4.9674 19 8 2.6811 -0.1085 -6.1527 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1174 1.4469 -0.1654 24 1 1.5480 2.0018 -0.7957 25 1 1.8180 1.9063 0.9611 26 1 2.3390 -0.1828 4.3868 27 1 3.1300 -0.7217 -1.2491 28 1 1.6767 -1.7489 -1.2493 29 1 2.5224 -2.5430 -3.4142 30 1 3.2577 -1.9155 -4.9088 31 1 3.8971 -1.4158 -3.3246 32 1 1.2695 1.0376 -5.1716 33 1 2.9533 1.2814 -4.6485 34 1 2.8259 0.4896 -6.8987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379367345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -55.611518 kcal Electronic energy + Delta-G solvation = -15055.708146 eV Core-core repulsion = 12569.546400 eV Total energy + Delta-G solvation = -2486.161746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51795 -36.78237 -36.18255 -31.89511 -30.54143 -27.97196 -26.81765 -26.21626 -25.02975 -22.77372 -19.79290 -18.47362 -17.51746 -16.23531 -15.94071 -15.38869 -15.12998 -14.39579 -13.87855 -13.37396 -13.10521 -12.79737 -12.69453 -12.43251 -12.03578 -11.94005 -11.87401 -11.19632 -10.83215 -10.41458 -10.33477 -10.26785 -10.12828 -9.96756 -9.75810 -9.31634 -8.99744 -8.58161 -8.29783 -6.12293 -4.03798 3.29612 3.39219 3.42437 3.54296 4.10359 4.42317 4.55529 4.94596 5.02106 5.06857 5.19511 5.39502 5.53462 5.77271 5.85894 5.98127 6.13234 6.21048 6.24436 6.31100 6.41825 6.52342 6.70934 6.73054 6.81630 6.88118 7.00184 7.35981 7.46088 7.55548 7.82568 8.52357 8.95931 9.56206 11.00974 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.055709 B = 0.007737 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.489744 B = 3617.991388 C = 3780.620176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 C -0.143 4.143 4 C -0.515 4.515 5 H 0.073 0.927 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.286 1.286 10 H -0.304 1.304 11 H -0.246 1.246 12 C -0.081 4.081 13 C 0.017 3.983 14 H 0.120 0.880 15 O -0.353 6.353 16 C -0.004 4.004 17 C -0.122 4.122 18 C 0.102 3.898 19 O -0.566 6.566 20 H 0.039 0.961 21 H 0.029 0.971 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.023 0.977 25 H 0.053 0.947 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 4.377 -14.420 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 C -0.201 4.201 4 C -0.552 4.552 5 H 0.091 0.909 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.704 3.296 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.171 1.171 12 C -0.118 4.118 13 C -0.039 4.039 14 H 0.138 0.862 15 O -0.274 6.274 16 C -0.044 4.044 17 C -0.179 4.179 18 C 0.024 3.976 19 O -0.372 6.372 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.186 3.706 -13.895 14.382 hybrid contribution -1.076 1.110 -0.015 1.546 sum -0.890 4.816 -13.910 14.747 Atomic orbital electron populations 1.22351 0.98995 1.00459 0.98480 1.18434 0.91345 0.92592 0.93671 1.22352 0.99967 0.97887 0.99855 1.20813 1.35826 1.10073 0.88529 0.90896 1.24958 0.95650 0.95845 0.96075 1.70021 1.36861 1.44894 1.00784 0.87529 0.83324 0.82211 0.76528 1.21307 1.23230 1.17134 1.21520 1.00377 0.99116 0.90820 1.24433 0.94160 0.97390 0.87934 0.86249 1.91658 1.21558 1.75572 1.38570 1.22656 0.87374 0.99373 0.94955 1.21416 0.97733 0.95666 1.03089 1.21838 0.98529 0.92796 0.84452 1.86481 1.89352 1.38881 1.22483 0.94267 0.95234 0.93290 0.93397 0.95802 0.92794 0.92717 0.90567 0.91487 0.91582 0.90685 0.90903 0.92829 0.91705 0.77437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 7.56 37.16 0.28 -2.95 16 2 C 0.04 0.91 0.52 -155.66 -0.08 0.83 16 3 C -0.14 -2.99 7.35 37.16 0.27 -2.72 16 4 C -0.52 -14.06 8.60 -34.44 -0.30 -14.36 16 5 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 6 C 0.08 2.19 5.23 -17.82 -0.09 2.09 16 7 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 8 Si 0.87 21.53 22.96 -169.99 -3.90 17.63 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 10 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 11 H -0.25 -5.58 4.62 56.52 0.26 -5.32 16 12 C -0.08 -1.58 3.71 -26.73 -0.10 -1.68 16 13 C 0.02 0.30 4.87 -26.73 -0.13 0.17 16 14 H 0.12 1.92 6.21 -51.93 -0.32 1.60 16 15 O -0.35 -6.68 14.37 -35.23 -0.51 -7.18 16 16 C 0.00 -0.07 3.18 -90.61 -0.29 -0.36 16 17 C -0.12 -1.75 8.94 37.16 0.33 -1.42 16 18 C 0.10 1.22 7.33 37.16 0.27 1.49 16 19 O -0.57 -6.33 12.20 -35.23 -0.43 -6.76 16 20 H 0.04 0.90 2.62 -51.93 -0.14 0.76 16 21 H 0.03 0.58 7.18 -51.92 -0.37 0.21 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 24 H 0.02 0.42 6.52 -51.93 -0.34 0.08 16 25 H 0.05 1.20 4.03 -51.93 -0.21 0.99 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 28 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.02 6.85 -51.93 -0.36 0.67 16 31 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.38 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -31.66 262.97 -4.30 -35.95 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.36 Total: 1.33 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.94 Total: -13.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -3.90 Total: 17.63 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.66 -4.30 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.658 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds