Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47487 * 2 1 4 4 C 1.50704 * 109.47347 * 120.00266 * 2 1 3 5 5 H 1.07996 * 120.00089 * 115.04104 * 4 2 1 6 6 C 1.37881 * 119.99497 * 295.31935 * 4 2 1 7 7 N 1.31510 * 119.99715 * 199.87163 * 6 4 2 8 8 Si 1.86803 * 120.00210 * 19.86974 * 6 4 2 9 9 H 1.48499 * 109.46676 * 84.63389 * 8 6 4 10 10 H 1.48493 * 109.47179 * 204.63426 * 8 6 4 11 11 H 1.48502 * 109.47126 * 324.63535 * 8 6 4 12 12 C 1.53006 * 109.47383 * 240.00116 * 2 1 3 13 13 C 1.52996 * 109.46912 * 59.99876 * 12 2 1 14 14 H 1.09003 * 115.71884 * 28.05975 * 13 12 2 15 15 O 1.42901 * 117.77232 * 241.01524 * 13 12 2 16 16 C 1.42891 * 64.73739 * 253.16259 * 15 13 12 17 17 C 1.53000 * 117.77552 * 106.84238 * 16 15 13 18 18 C 1.53009 * 117.77439 * 253.16173 * 16 15 13 19 19 O 1.42898 * 109.46795 * 246.01472 * 18 16 15 20 20 H 1.09000 * 109.47319 * 300.00230 * 1 2 3 21 21 H 1.09008 * 109.46801 * 59.99881 * 1 2 3 22 22 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47532 * 189.25924 * 3 2 1 24 24 H 1.08998 * 109.47102 * 309.26145 * 3 2 1 25 25 H 1.09001 * 109.47178 * 69.25861 * 3 2 1 26 26 H 0.97000 * 120.00076 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47591 * 180.02562 * 12 2 1 28 28 H 1.09000 * 109.47084 * 300.00160 * 12 2 1 29 29 H 1.09005 * 109.46462 * 353.98423 * 17 16 15 30 30 H 1.08996 * 109.47337 * 113.97995 * 17 16 15 31 31 H 1.08995 * 109.47213 * 233.98949 * 17 16 15 32 32 H 1.08994 * 109.46800 * 6.01769 * 18 16 15 33 33 H 1.09000 * 109.47184 * 126.01807 * 18 16 15 34 34 H 0.96705 * 113.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5856 -1.6329 1.1333 6 6 1.7807 -0.1858 2.4804 7 7 2.5158 -0.5522 3.5075 8 14 0.3956 1.0456 2.7150 9 1 -0.8847 0.3190 2.9101 10 1 0.6757 1.8842 3.9080 11 1 0.2949 1.9122 1.5133 12 6 2.0400 -0.7212 -1.2493 13 6 1.5300 0.0000 -2.4985 14 1 1.3410 1.0674 -2.3843 15 8 0.6939 -0.7331 -3.3959 16 6 2.0244 -0.4949 -3.8592 17 6 2.9953 -1.6773 -3.8781 18 6 2.2186 0.5421 -4.9674 19 8 2.6811 -0.1085 -6.1527 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1174 1.4469 -0.1654 24 1 1.5480 2.0018 -0.7957 25 1 1.8180 1.9063 0.9611 26 1 2.3390 -0.1828 4.3868 27 1 3.1300 -0.7217 -1.2491 28 1 1.6767 -1.7489 -1.2493 29 1 2.5224 -2.5430 -3.4142 30 1 3.2577 -1.9155 -4.9088 31 1 3.8971 -1.4158 -3.3246 32 1 1.2695 1.0376 -5.1716 33 1 2.9533 1.2814 -4.6485 34 1 2.8259 0.4896 -6.8987 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379367345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -80.982997 kcal Electronic energy + Delta-G solvation = -15056.808336 eV Core-core repulsion = 12569.546400 eV Total energy + Delta-G solvation = -2487.261936 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81573 -38.15032 -37.43129 -34.01079 -31.72151 -29.51576 -27.98431 -27.77832 -27.03935 -24.23704 -21.18203 -20.08882 -18.38702 -18.07261 -17.54043 -16.82465 -16.37729 -15.86981 -15.15536 -14.94377 -14.78989 -14.51657 -13.96546 -13.82760 -13.70198 -13.60081 -13.18492 -12.68405 -12.42471 -12.11655 -12.03681 -11.93856 -11.62701 -11.32313 -11.12365 -10.89388 -10.63420 -10.45496 -10.25981 -8.30790 -6.25316 1.34499 1.38672 1.47857 2.35489 2.36167 3.03851 3.05599 3.44579 3.82391 3.92877 4.03875 4.20363 4.32763 4.44386 4.54232 4.59334 4.65325 4.77593 4.86082 4.92499 4.98492 5.05652 5.08387 5.17510 5.24179 5.28005 5.34293 5.62347 5.76889 5.88883 6.37593 6.77874 6.92584 7.37585 8.86350 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.055709 B = 0.007737 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.489744 B = 3617.991388 C = 3780.620176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 C -0.143 4.143 4 C -0.518 4.518 5 H 0.030 0.970 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.926 3.074 9 H -0.290 1.290 10 H -0.309 1.309 11 H -0.205 1.205 12 C -0.073 4.073 13 C 0.014 3.986 14 H 0.142 0.858 15 O -0.385 6.385 16 C 0.003 3.997 17 C -0.124 4.124 18 C 0.105 3.895 19 O -0.583 6.583 20 H 0.033 0.967 21 H 0.057 0.943 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.263 0.737 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 6.612 -16.719 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.033 3.967 3 C -0.200 4.200 4 C -0.555 4.555 5 H 0.049 0.951 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.755 3.245 9 H -0.217 1.217 10 H -0.238 1.238 11 H -0.128 1.128 12 C -0.111 4.111 13 C -0.042 4.042 14 H 0.159 0.841 15 O -0.307 6.307 16 C -0.036 4.036 17 C -0.181 4.181 18 C 0.028 3.972 19 O -0.392 6.392 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.371 5.956 -16.247 17.308 hybrid contribution -0.805 0.271 0.634 1.060 sum -1.176 6.227 -15.613 16.850 Atomic orbital electron populations 1.22299 0.98277 1.00134 0.99449 1.18466 0.91891 0.93759 0.92535 1.22273 1.00882 0.96375 1.00428 1.21157 1.34701 1.08785 0.90869 0.95120 1.25748 0.97731 0.98307 0.95746 1.70153 1.39018 1.47340 1.01414 0.86653 0.79579 0.80539 0.77721 1.21725 1.23773 1.12846 1.21314 1.00488 0.97946 0.91320 1.24243 0.95014 0.97520 0.87407 0.84114 1.91640 1.23351 1.76110 1.39562 1.23156 0.85698 0.99767 0.94987 1.21462 0.97940 0.95068 1.03672 1.21826 0.99905 0.91695 0.83823 1.86411 1.89319 1.40280 1.23203 0.94859 0.92385 0.94530 0.92789 0.91891 0.94282 0.92786 0.90357 0.93713 0.93269 0.89752 0.89819 0.92110 0.88903 0.74620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 7.56 71.98 0.54 -5.53 16 2 C 0.03 1.50 0.52 -52.93 -0.03 1.47 16 3 C -0.14 -5.47 7.35 71.98 0.53 -4.94 16 4 C -0.52 -28.81 8.60 25.60 0.22 -28.59 16 5 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 6 C 0.02 1.29 5.23 84.66 0.44 1.74 16 7 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 8 Si 0.93 43.89 22.96 68.60 1.58 45.46 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.31 -14.80 7.11 99.48 0.71 -14.10 16 11 H -0.20 -8.39 4.62 99.48 0.46 -7.93 16 12 C -0.07 -2.80 3.71 30.59 0.11 -2.68 16 13 C 0.01 0.45 4.87 30.59 0.15 0.60 16 14 H 0.14 3.84 6.21 -2.39 -0.01 3.83 16 15 O -0.39 -13.79 14.37 -148.98 -2.14 -15.94 16 16 C 0.00 0.07 3.18 -10.79 -0.03 0.04 16 17 C -0.12 -3.38 8.94 71.98 0.64 -2.74 16 18 C 0.11 2.10 7.33 71.99 0.53 2.62 16 19 O -0.58 -10.88 12.20 -148.98 -1.82 -12.70 16 20 H 0.03 1.42 2.62 -2.39 -0.01 1.42 16 21 H 0.06 2.10 7.18 -2.38 -0.02 2.08 16 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 24 H 0.06 1.93 6.52 -2.39 -0.02 1.91 16 25 H 0.04 1.60 4.03 -2.39 -0.01 1.59 16 26 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.08 2.90 7.82 -2.39 -0.02 2.88 16 28 H 0.04 1.87 8.13 -2.39 -0.02 1.85 16 29 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 2.13 6.85 -2.39 -0.02 2.11 16 31 H 0.08 2.07 7.88 -2.39 -0.02 2.05 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.40 3.12 9.12 -74.05 -0.68 2.45 16 Total: -1.00 -69.51 262.97 1.19 -68.32 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.17 Total: 11.05 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 3.11 Total: -38.01 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.30 Total: -58.18 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -3.96 Total: -28.63 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.58 Total: 45.46 kcal Total: -69.51 1.19 -68.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.664 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds