Wall clock time and date at job start Mon Mar 30 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00026 * 2 1 4 4 O 1.21279 * 120.00115 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99680 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46936 * 179.97438 * 5 3 2 7 7 C 1.42899 * 113.99952 * 180.02562 * 6 5 3 8 8 C 1.53496 * 114.20673 * 210.00074 * 7 6 5 9 9 N 1.47062 * 87.98485 * 220.14963 * 8 7 6 10 10 C 1.36939 * 136.05593 * 207.08750 * 9 8 7 11 11 H 1.08008 * 119.99868 * 7.82597 * 10 9 8 12 12 C 1.38808 * 120.00203 * 187.82575 * 10 9 8 13 13 N 1.31618 * 119.99998 * 195.17052 * 12 10 9 14 14 Si 1.86797 * 119.99840 * 15.16580 * 12 10 9 15 15 H 1.48503 * 109.47450 * 270.00422 * 14 12 10 16 16 H 1.48503 * 109.47360 * 30.00092 * 14 12 10 17 17 H 1.48498 * 109.47360 * 150.00270 * 14 12 10 18 18 C 1.47059 * 87.88616 * 27.34176 * 9 8 7 19 19 H 1.09000 * 109.46922 * 59.99248 * 1 2 3 20 20 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46580 * 300.00054 * 1 2 3 22 22 H 0.96999 * 119.99497 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46755 * 60.00050 * 5 3 2 24 24 H 1.08993 * 109.47032 * 300.00243 * 5 3 2 25 25 H 1.09001 * 113.27880 * 343.07049 * 7 6 5 26 26 H 1.09008 * 113.46447 * 105.36397 * 8 7 6 27 27 H 1.08996 * 113.51824 * 334.94207 * 8 7 6 28 28 H 0.96995 * 120.00365 * 354.90363 * 13 12 10 29 29 H 1.08997 * 113.47135 * 87.43718 * 18 9 8 30 30 H 1.09007 * 113.47198 * 217.88025 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 -0.0006 6 8 4.1224 2.5144 -0.0011 7 6 5.5469 2.6272 -0.0022 8 6 6.0792 3.8855 0.6973 9 7 7.0759 3.9986 -0.3781 10 6 8.3327 4.5272 -0.5061 11 1 8.8561 4.8926 0.3652 12 6 8.9339 4.5935 -1.7555 13 7 10.2278 4.8144 -1.8522 14 14 7.9066 4.3691 -3.2993 15 1 7.8728 2.9306 -3.6668 16 1 6.5236 4.8481 -3.0478 17 1 8.5064 5.1499 -4.4109 18 6 6.1265 3.3000 -1.2574 19 1 -0.3633 0.5140 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.9500 -0.8401 -0.0004 23 1 4.0089 0.6534 -0.8909 24 1 4.0096 0.6530 0.8891 25 1 6.0522 1.7063 0.2890 26 1 6.5167 3.6861 1.6756 27 1 5.3646 4.7084 0.7152 28 1 10.7483 5.0042 -1.0561 29 1 5.4238 3.9679 -1.7555 30 1 6.6043 2.6016 -1.9446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379403123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:48 Heat of formation + Delta-G solvation = -12.139531 kcal Electronic energy + Delta-G solvation = -14142.363354 eV Core-core repulsion = 11554.546351 eV Total energy + Delta-G solvation = -2587.817003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.79130 -38.72257 -36.01655 -34.70772 -32.29408 -29.34164 -27.62147 -25.61221 -25.23936 -22.46323 -20.81010 -19.68248 -17.55047 -17.36002 -16.96918 -16.08514 -15.62362 -15.27595 -14.55440 -14.09079 -13.64307 -13.33219 -13.09678 -12.81642 -12.53818 -11.88682 -11.86068 -11.42954 -11.18201 -10.62565 -10.28805 -9.86694 -9.81842 -9.36288 -9.27322 -8.87074 -8.69842 -7.18755 -6.31358 -3.23581 2.52632 2.76507 3.42950 3.53758 3.66643 4.07510 4.60602 4.65377 4.88460 4.98132 5.01416 5.10257 5.23198 5.32303 5.40279 5.48136 5.53758 6.13923 6.19062 6.29097 6.38818 6.41718 6.60164 7.10844 7.20182 7.53207 8.10102 8.23640 8.97155 9.49860 10.36556 11.19003 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.062720 B = 0.006237 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.318399 B = 4488.530009 C = 4718.183561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.740 5.740 3 C 0.512 3.488 4 O -0.515 6.515 5 C 0.044 3.956 6 O -0.352 6.352 7 C 0.040 3.960 8 C 0.120 3.880 9 N -0.620 5.620 10 C -0.304 4.304 11 H 0.084 0.916 12 C -0.022 4.022 13 N -0.931 5.931 14 Si 1.060 2.940 15 H -0.294 1.294 16 H -0.279 1.279 17 H -0.294 1.294 18 C 0.087 3.913 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.059 0.941 22 H 0.402 0.598 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 -13.351 3.624 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.395 5.395 3 C 0.297 3.703 4 O -0.389 6.389 5 C -0.037 4.037 6 O -0.269 6.269 7 C -0.019 4.019 8 C -0.006 4.006 9 N -0.350 5.350 10 C -0.430 4.430 11 H 0.102 0.898 12 C -0.221 4.221 13 N -0.573 5.573 14 Si 0.892 3.108 15 H -0.221 1.221 16 H -0.205 1.205 17 H -0.221 1.221 18 C -0.039 4.039 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.078 0.922 22 H 0.235 0.765 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.653 -12.365 1.963 20.835 hybrid contribution 0.263 -0.481 1.645 1.734 sum -16.391 -12.846 3.609 21.136 Atomic orbital electron populations 1.21514 0.79376 1.02093 1.02451 1.45705 1.07785 1.08545 1.77430 1.20524 0.89807 0.83788 0.76175 1.90739 1.70059 1.31166 1.46924 1.22186 0.91297 0.87708 1.02479 1.88051 1.21900 1.22232 1.94681 1.24657 0.78406 0.99118 0.99699 1.22536 0.90585 0.93942 0.93574 1.45885 1.12302 1.67907 1.08875 1.20122 0.87074 1.39751 0.96046 0.89835 1.25793 0.97399 0.99263 0.99670 1.70910 1.04318 1.49902 1.32130 0.83807 0.75027 0.76194 0.75816 1.22139 1.20543 1.22143 1.23186 0.91718 0.94667 0.94302 0.92195 0.90648 0.92235 0.76459 0.90257 0.90361 0.88717 0.93231 0.93516 0.92822 0.92717 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.29 5.71 -67.07 -0.38 -6.67 16 3 C 0.51 6.74 7.91 -10.98 -0.09 6.65 16 4 O -0.52 -9.41 16.50 -14.35 -0.24 -9.64 16 5 C 0.04 0.54 6.26 36.01 0.23 0.76 16 6 O -0.35 -6.21 9.93 -55.14 -0.55 -6.76 16 7 C 0.04 0.74 4.68 -26.08 -0.12 0.62 16 8 C 0.12 2.55 8.52 -8.52 -0.07 2.48 16 9 N -0.62 -15.91 3.62 -184.66 -0.67 -16.58 16 10 C -0.30 -8.97 11.03 -15.06 -0.17 -9.13 16 11 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 12 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 13 N -0.93 -29.65 13.70 55.49 0.76 -28.89 16 14 Si 1.06 27.23 25.50 -169.99 -4.34 22.90 16 15 H -0.29 -7.14 6.97 56.52 0.39 -6.74 16 16 H -0.28 -6.84 5.66 56.52 0.32 -6.52 16 17 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 18 C 0.09 1.95 5.46 -8.39 -0.05 1.90 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.40 1.96 8.83 -40.82 -0.36 1.60 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 1.52 7.88 -51.93 -0.41 1.11 16 26 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 29 H 0.06 1.26 7.02 -51.93 -0.36 0.90 16 30 H 0.05 1.15 6.22 -51.93 -0.32 0.82 16 LS Contribution 258.50 15.07 3.90 3.90 Total: -1.00 -36.77 258.50 -5.32 -42.09 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.08 Total: -4.16 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.28 Total: 3.82 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.29 Total: -52.14 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.78 Total: -16.40 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.34 Total: 22.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -36.77 -5.32 -42.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379403123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.954 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds