Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00026 * 2 1 4 4 O 1.21279 * 120.00115 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99680 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46936 * 179.97438 * 5 3 2 7 7 C 1.42899 * 113.99952 * 180.02562 * 6 5 3 8 8 C 1.53496 * 114.20673 * 210.00074 * 7 6 5 9 9 N 1.47062 * 87.98485 * 220.14963 * 8 7 6 10 10 C 1.36939 * 136.05593 * 207.08750 * 9 8 7 11 11 H 1.08008 * 119.99868 * 7.82597 * 10 9 8 12 12 C 1.38808 * 120.00203 * 187.82575 * 10 9 8 13 13 N 1.31618 * 119.99998 * 195.17052 * 12 10 9 14 14 Si 1.86797 * 119.99840 * 15.16580 * 12 10 9 15 15 H 1.48503 * 109.47450 * 270.00422 * 14 12 10 16 16 H 1.48503 * 109.47360 * 30.00092 * 14 12 10 17 17 H 1.48498 * 109.47360 * 150.00270 * 14 12 10 18 18 C 1.47059 * 87.88616 * 27.34176 * 9 8 7 19 19 H 1.09000 * 109.46922 * 59.99248 * 1 2 3 20 20 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46580 * 300.00054 * 1 2 3 22 22 H 0.96999 * 119.99497 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46755 * 60.00050 * 5 3 2 24 24 H 1.08993 * 109.47032 * 300.00243 * 5 3 2 25 25 H 1.09001 * 113.27880 * 343.07049 * 7 6 5 26 26 H 1.09008 * 113.46447 * 105.36397 * 8 7 6 27 27 H 1.08996 * 113.51824 * 334.94207 * 8 7 6 28 28 H 0.96995 * 120.00365 * 354.90363 * 13 12 10 29 29 H 1.08997 * 113.47135 * 87.43718 * 18 9 8 30 30 H 1.09007 * 113.47198 * 217.88025 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 -0.0006 6 8 4.1224 2.5144 -0.0011 7 6 5.5469 2.6272 -0.0022 8 6 6.0792 3.8855 0.6973 9 7 7.0759 3.9986 -0.3781 10 6 8.3327 4.5272 -0.5061 11 1 8.8561 4.8926 0.3652 12 6 8.9339 4.5935 -1.7555 13 7 10.2278 4.8144 -1.8522 14 14 7.9066 4.3691 -3.2993 15 1 7.8728 2.9306 -3.6668 16 1 6.5236 4.8481 -3.0478 17 1 8.5064 5.1499 -4.4109 18 6 6.1265 3.3000 -1.2574 19 1 -0.3633 0.5140 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.9500 -0.8401 -0.0004 23 1 4.0089 0.6534 -0.8909 24 1 4.0096 0.6530 0.8891 25 1 6.0522 1.7063 0.2890 26 1 6.5167 3.6861 1.6756 27 1 5.3646 4.7084 0.7152 28 1 10.7483 5.0042 -1.0561 29 1 5.4238 3.9679 -1.7555 30 1 6.6043 2.6016 -1.9446 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379403123.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -42.187124 kcal Electronic energy + Delta-G solvation = -14143.666315 eV Core-core repulsion = 11554.546351 eV Total energy + Delta-G solvation = -2589.119964 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90736 -40.20480 -37.44475 -35.60603 -34.50307 -30.53366 -29.31890 -26.97678 -26.46134 -24.30061 -21.78101 -21.42065 -19.56597 -18.40559 -18.25265 -17.24329 -16.93515 -16.63626 -16.00455 -15.29620 -15.22417 -15.14799 -14.49275 -13.88822 -13.56480 -13.50376 -13.13879 -13.07267 -12.69596 -12.48775 -11.93513 -11.67443 -11.40587 -10.95706 -10.86493 -10.36323 -10.13518 -9.30111 -8.65857 -5.51355 1.38454 1.51996 1.56813 1.66985 1.86081 2.50499 2.84891 3.11361 3.26039 3.52510 3.82084 4.04245 4.29040 4.37156 4.49211 4.56031 4.63388 4.64197 4.69218 4.74502 4.96544 5.00445 5.14412 5.41108 5.92162 6.16312 6.57649 6.66592 7.25559 7.28353 8.23155 8.86126 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.062720 B = 0.006237 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.318399 B = 4488.530009 C = 4718.183561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.507 3.493 4 O -0.579 6.579 5 C 0.035 3.965 6 O -0.377 6.377 7 C 0.078 3.922 8 C 0.111 3.889 9 N -0.649 5.649 10 C -0.296 4.296 11 H 0.055 0.945 12 C -0.077 4.077 13 N -0.964 5.964 14 Si 1.099 2.901 15 H -0.267 1.267 16 H -0.266 1.266 17 H -0.300 1.300 18 C 0.077 3.923 19 H 0.046 0.954 20 H 0.117 0.883 21 H 0.048 0.952 22 H 0.423 0.577 23 H 0.109 0.891 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.249 0.751 29 H 0.046 0.954 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -16.111 3.496 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.372 5.372 3 C 0.293 3.707 4 O -0.458 6.458 5 C -0.045 4.045 6 O -0.294 6.294 7 C 0.020 3.980 8 C -0.014 4.014 9 N -0.379 5.379 10 C -0.423 4.423 11 H 0.073 0.927 12 C -0.270 4.270 13 N -0.609 5.609 14 Si 0.924 3.076 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.227 1.227 18 C -0.048 4.048 19 H 0.065 0.935 20 H 0.135 0.865 21 H 0.066 0.934 22 H 0.260 0.740 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.147 0.853 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.467 -15.218 1.871 24.003 hybrid contribution 0.700 0.320 1.809 1.966 sum -17.768 -14.897 3.680 23.477 Atomic orbital electron populations 1.21685 0.78501 1.04456 1.01300 1.45580 1.08408 1.08213 1.75041 1.20821 0.90347 0.84027 0.75471 1.90722 1.71198 1.33513 1.50349 1.22582 0.90636 0.85568 1.05682 1.88012 1.20810 1.25932 1.94638 1.24106 0.79416 0.98789 0.95735 1.22724 0.89610 0.95596 0.93501 1.45940 1.12181 1.68191 1.11638 1.20007 0.88903 1.38328 0.95060 0.92735 1.27028 0.97583 0.99547 1.02807 1.71006 1.05546 1.52753 1.31566 0.83326 0.74183 0.77654 0.72452 1.19332 1.19099 1.22736 1.23358 0.90968 0.94703 0.95810 0.93498 0.86469 0.93359 0.73953 0.87278 0.86613 0.85328 0.91906 0.94115 0.94187 0.93581 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.70 127.77 1.37 2.38 16 2 N -0.72 -9.74 5.71 -484.51 -2.77 -12.51 16 3 C 0.51 12.04 7.91 87.66 0.69 12.73 16 4 O -0.58 -20.72 16.50 16.01 0.26 -20.45 16 5 C 0.03 0.70 6.26 71.24 0.45 1.15 16 6 O -0.38 -12.13 9.93 -129.94 -1.29 -13.42 16 7 C 0.08 2.63 4.68 31.01 0.15 2.77 16 8 C 0.11 4.54 8.52 83.17 0.71 5.25 16 9 N -0.65 -32.68 3.62 -738.64 -2.68 -35.35 16 10 C -0.30 -17.63 11.03 84.03 0.93 -16.71 16 11 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 12 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 13 N -0.96 -62.71 13.70 21.65 0.30 -62.41 16 14 Si 1.10 54.40 25.50 68.60 1.75 56.15 16 15 H -0.27 -12.01 6.97 99.48 0.69 -11.32 16 16 H -0.27 -12.41 5.66 99.48 0.56 -11.85 16 17 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 18 C 0.08 3.24 5.46 83.26 0.45 3.70 16 19 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 20 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 21 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 22 H 0.42 2.17 8.83 -92.71 -0.82 1.35 16 23 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.13 3.47 7.88 -2.39 -0.02 3.45 16 26 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 29 H 0.05 2.04 7.02 -2.39 -0.02 2.02 16 30 H 0.06 2.40 6.22 -2.38 -0.01 2.39 16 Total: -1.00 -82.27 258.50 0.91 -81.36 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 0.12 Total: -0.44 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.21 Total: 7.08 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -5.15 Total: -110.28 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.03 Total: -33.87 kcal Atomic # 14 Polarization: 54.40 SS G_CDS: 1.75 Total: 56.15 kcal Total: -82.27 0.91 -81.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379403123.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.171 kcal (2) G-P(sol) polarization free energy of solvation -82.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds