Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53932 * 113.73156 * 246.72996 * 3 2 1 5 5 N 1.47963 * 86.18037 * 221.91885 * 4 3 2 6 6 C 1.46895 * 111.00127 * 137.58251 * 5 4 3 7 7 C 1.50695 * 109.47082 * 70.64167 * 6 5 4 8 8 O 1.21294 * 120.00180 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00105 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00193 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99610 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00004 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00163 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99762 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47289 * 90.00332 * 14 12 10 16 16 H 1.48505 * 109.46930 * 209.99925 * 14 12 10 17 17 H 1.48495 * 109.47307 * 329.99917 * 14 12 10 18 18 C 1.47962 * 90.76066 * 24.68871 * 5 4 3 19 19 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 21 21 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 22 22 H 1.08997 * 112.93632 * 18.43110 * 3 2 1 23 23 H 1.08997 * 113.76088 * 336.23673 * 4 3 2 24 24 H 1.08999 * 113.76050 * 107.60603 * 4 3 2 25 25 H 1.08997 * 109.47609 * 190.64553 * 6 5 4 26 26 H 1.09004 * 109.47210 * 310.64668 * 6 5 4 27 27 H 0.96995 * 119.99963 * 0.02562 * 9 7 6 28 28 H 0.97004 * 120.00248 * 179.97438 * 13 12 10 29 29 H 1.09000 * 113.76088 * 220.99057 * 18 5 4 30 30 H 1.09003 * 113.75638 * 89.62705 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7709 1.6449 -1.2945 5 7 3.7994 2.2443 -0.4158 6 6 5.1510 1.8948 -0.8729 7 6 5.4507 2.6229 -2.1577 8 8 4.6203 3.3610 -2.6446 9 7 6.6416 2.4542 -2.7660 10 6 6.9145 3.1171 -3.9347 11 1 6.1751 3.7742 -4.3681 12 6 8.1424 2.9435 -4.5614 13 7 9.0423 2.1443 -4.0337 14 14 8.5139 3.8461 -6.1541 15 1 9.1370 5.1584 -5.8456 16 1 9.4481 3.0356 -6.9760 17 1 7.2522 4.0620 -6.9067 18 6 3.3772 1.3750 0.7046 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 1.3132 2.0809 0.3174 23 1 3.1179 0.7690 -1.8426 24 1 2.2584 2.3690 -1.9280 25 1 5.8775 2.1837 -0.1135 26 1 5.2106 0.8196 -1.0423 27 1 7.3055 1.8637 -2.3769 28 1 9.8994 2.0228 -4.4715 29 1 3.3491 1.8833 1.6684 30 1 3.9015 0.4201 0.7411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379413792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = -40.944419 kcal Electronic energy + Delta-G solvation = -14188.126914 eV Core-core repulsion = 11599.060837 eV Total energy + Delta-G solvation = -2589.066076 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.00656 -37.89734 -36.47539 -33.86701 -31.26580 -29.93147 -26.85201 -25.92668 -25.20832 -23.27765 -19.93268 -19.19906 -17.89308 -16.90168 -16.14218 -15.76858 -15.22949 -14.74549 -14.46574 -13.95901 -13.69786 -13.24245 -13.11828 -12.41097 -12.08920 -11.66213 -11.51165 -11.36805 -11.23312 -11.04228 -10.47398 -10.37654 -10.19483 -9.52882 -9.45736 -8.67729 -8.22381 -7.94310 -6.39691 -3.80527 3.19380 3.27707 3.33657 3.64134 3.92594 4.12266 4.26644 4.57940 4.97671 4.99949 5.23315 5.26964 5.29895 5.33300 5.55529 5.63437 5.71890 5.77430 5.81515 6.02368 6.22566 6.29567 6.62590 7.17150 7.21337 7.56969 8.07737 8.63618 9.19866 9.56286 10.08115 10.78191 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.068696 B = 0.005760 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.497745 B = 4860.024335 C = 4992.043199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.052 3.948 4 C 0.005 3.995 5 N -0.452 5.452 6 C 0.013 3.987 7 C 0.444 3.556 8 O -0.580 6.580 9 N -0.565 5.565 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.001 4.001 19 H 0.082 0.918 20 H 0.042 0.958 21 H 0.040 0.960 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.392 0.608 28 H 0.271 0.729 29 H 0.093 0.907 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 -4.598 8.211 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.006 4.006 4 C -0.124 4.124 5 N -0.176 5.176 6 C -0.119 4.119 7 C 0.230 3.770 8 O -0.464 6.464 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.130 4.130 19 H 0.101 0.899 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.225 0.775 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.633 -3.610 7.883 13.719 hybrid contribution 0.713 -0.626 -0.691 1.174 sum -9.919 -4.235 7.192 12.964 Atomic orbital electron populations 1.22774 0.81329 1.02491 1.00001 1.87944 1.19647 1.27779 1.94571 1.24328 0.94227 0.84901 0.97164 1.24337 0.93436 0.98776 0.95803 1.68343 1.01543 1.43409 1.04286 1.22439 0.92833 0.98518 0.98096 1.19684 0.83974 0.86675 0.86715 1.90514 1.47516 1.41308 1.67038 1.41868 1.13763 1.41854 1.22666 1.19702 1.00432 1.23570 0.99127 0.87948 1.25258 0.95490 0.97379 0.99813 1.69615 1.07095 1.37197 1.40481 0.85853 0.78408 0.78943 0.81048 1.20389 1.20935 1.19440 1.24320 0.94231 0.97098 0.97329 0.89908 0.93893 0.94102 0.88692 0.90776 0.88618 0.89016 0.92582 0.77468 0.91883 0.88913 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.39 16 2 O -0.38 -5.08 10.72 -35.23 -0.38 -5.46 16 3 C 0.05 0.71 4.50 -25.80 -0.12 0.59 16 4 C 0.01 0.09 6.59 -2.77 -0.02 0.07 16 5 N -0.45 -8.01 5.95 -239.98 -1.43 -9.43 16 6 C 0.01 0.25 5.31 -4.98 -0.03 0.22 16 7 C 0.44 10.89 7.59 -10.99 -0.08 10.80 16 8 O -0.58 -16.16 15.13 5.55 0.08 -16.07 16 9 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 10 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 11 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 14 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 C 0.00 -0.01 7.81 -2.77 -0.02 -0.03 16 19 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 23 H 0.07 1.30 7.78 -51.93 -0.40 0.90 16 24 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 27 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 LS Contribution 262.13 15.07 3.95 3.95 Total: -1.00 -31.96 262.13 -5.52 -37.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.98 Total: 7.29 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.59 Total: 4.91 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.76 Total: -48.40 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.29 Total: -21.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.96 -5.52 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.458 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds