Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53932 * 113.73156 * 246.72996 * 3 2 1 5 5 N 1.47963 * 86.18037 * 221.91885 * 4 3 2 6 6 C 1.46895 * 111.00127 * 137.58251 * 5 4 3 7 7 C 1.50695 * 109.47082 * 70.64167 * 6 5 4 8 8 O 1.21294 * 120.00180 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00105 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00193 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99610 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00004 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00163 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99762 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47289 * 90.00332 * 14 12 10 16 16 H 1.48505 * 109.46930 * 209.99925 * 14 12 10 17 17 H 1.48495 * 109.47307 * 329.99917 * 14 12 10 18 18 C 1.47962 * 90.76066 * 24.68871 * 5 4 3 19 19 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 21 21 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 22 22 H 1.08997 * 112.93632 * 18.43110 * 3 2 1 23 23 H 1.08997 * 113.76088 * 336.23673 * 4 3 2 24 24 H 1.08999 * 113.76050 * 107.60603 * 4 3 2 25 25 H 1.08997 * 109.47609 * 190.64553 * 6 5 4 26 26 H 1.09004 * 109.47210 * 310.64668 * 6 5 4 27 27 H 0.96995 * 119.99963 * 0.02562 * 9 7 6 28 28 H 0.97004 * 120.00248 * 179.97438 * 13 12 10 29 29 H 1.09000 * 113.76088 * 220.99057 * 18 5 4 30 30 H 1.09003 * 113.75638 * 89.62705 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7709 1.6449 -1.2945 5 7 3.7994 2.2443 -0.4158 6 6 5.1510 1.8948 -0.8729 7 6 5.4507 2.6229 -2.1577 8 8 4.6203 3.3610 -2.6446 9 7 6.6416 2.4542 -2.7660 10 6 6.9145 3.1171 -3.9347 11 1 6.1751 3.7742 -4.3681 12 6 8.1424 2.9435 -4.5614 13 7 9.0423 2.1443 -4.0337 14 14 8.5139 3.8461 -6.1541 15 1 9.1370 5.1584 -5.8456 16 1 9.4481 3.0356 -6.9760 17 1 7.2522 4.0620 -6.9067 18 6 3.3772 1.3750 0.7046 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 1.3132 2.0809 0.3174 23 1 3.1179 0.7690 -1.8426 24 1 2.2584 2.3690 -1.9280 25 1 5.8775 2.1837 -0.1135 26 1 5.2106 0.8196 -1.0423 27 1 7.3055 1.8637 -2.3769 28 1 9.8994 2.0228 -4.4715 29 1 3.3491 1.8833 1.6684 30 1 3.9015 0.4201 0.7411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379413792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = -67.424769 kcal Electronic energy + Delta-G solvation = -14189.275188 eV Core-core repulsion = 11599.060837 eV Total energy + Delta-G solvation = -2590.214351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.31513 -39.68276 -37.62012 -35.94168 -33.33146 -31.39036 -27.89322 -27.20252 -26.86288 -24.79436 -21.25564 -20.92775 -19.92916 -18.07122 -17.83045 -17.02224 -16.62335 -16.39007 -15.90114 -15.73287 -15.10400 -14.70986 -14.46756 -13.83033 -13.56506 -13.51557 -13.08561 -12.83197 -12.44861 -12.34659 -12.24642 -12.12580 -11.67824 -11.51718 -10.52653 -10.37278 -10.04230 -9.83050 -8.48340 -5.97646 1.37153 1.40815 1.53918 2.01562 2.27214 2.59860 2.97886 3.17710 3.24866 3.51939 3.95090 4.09938 4.28590 4.29738 4.46790 4.50272 4.53389 4.58615 4.70428 4.80658 4.87842 4.94420 5.30076 5.39105 5.83261 6.02678 6.23648 6.57588 7.10155 7.52614 8.08244 8.69251 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.068696 B = 0.005760 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.497745 B = 4860.024335 C = 4992.043199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.071 3.929 4 C -0.006 4.006 5 N -0.475 5.475 6 C 0.025 3.975 7 C 0.439 3.561 8 O -0.619 6.619 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.995 3.005 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.273 1.273 18 C 0.007 3.993 19 H 0.099 0.901 20 H 0.043 0.957 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.396 0.604 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -5.095 9.143 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.012 3.988 4 C -0.135 4.135 5 N -0.200 5.200 6 C -0.106 4.106 7 C 0.227 3.773 8 O -0.505 6.505 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.198 1.198 18 C -0.121 4.121 19 H 0.117 0.883 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.131 0.869 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.092 0.908 27 H 0.230 0.770 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.790 -4.132 8.843 14.550 hybrid contribution 0.699 -0.502 -0.955 1.285 sum -10.092 -4.634 7.887 13.621 Atomic orbital electron populations 1.23019 0.79385 1.03972 1.00962 1.87916 1.21814 1.27401 1.94470 1.24132 0.94638 0.85677 0.94363 1.24327 0.94355 0.97696 0.97107 1.68321 1.00721 1.45120 1.05814 1.22336 0.94403 0.98562 0.95319 1.20710 0.82761 0.85910 0.87949 1.90481 1.48493 1.43009 1.68535 1.41940 1.14564 1.42066 1.22488 1.19670 1.00949 1.24988 1.00885 0.90383 1.26060 0.94706 0.97742 1.02676 1.69674 1.07404 1.37466 1.41597 0.84906 0.78128 0.78106 0.77049 1.19535 1.19393 1.19803 1.24393 0.93735 0.97005 0.96934 0.88274 0.93815 0.92248 0.86924 0.92082 0.90915 0.86834 0.90770 0.76977 0.91215 0.86364 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.85 113.37 1.23 1.61 16 2 O -0.40 -9.74 10.72 -148.98 -1.60 -11.34 16 3 C 0.07 1.77 4.50 31.24 0.14 1.92 16 4 C -0.01 -0.19 6.59 86.40 0.57 0.38 16 5 N -0.48 -16.32 5.95 -916.38 -5.45 -21.77 16 6 C 0.03 0.93 5.31 85.56 0.45 1.39 16 7 C 0.44 21.88 7.59 87.65 0.67 22.55 16 8 O -0.62 -35.58 15.13 -3.07 -0.05 -35.62 16 9 N -0.57 -30.42 5.29 -306.98 -1.62 -32.04 16 10 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 14 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.01 0.18 7.81 86.40 0.67 0.86 16 19 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 21 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 22 H 0.11 2.43 7.87 -2.39 -0.02 2.41 16 23 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 24 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 25 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 26 H 0.07 2.46 7.69 -2.38 -0.02 2.44 16 27 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 28 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.09 1.99 7.79 -2.39 -0.02 1.97 16 Total: -1.00 -69.11 262.13 -0.99 -70.10 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.41 Total: 25.48 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.01 Total: 9.81 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -6.79 Total: -103.94 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.64 Total: -46.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.11 -0.99 -70.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379413792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.670 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds