Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.42902 * 114.00186 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.75059 * 32.01689 * 14 13 12 16 16 C 1.55299 * 110.85069 * 155.71189 * 14 13 12 17 17 C 1.54944 * 100.94278 * 152.32356 * 16 14 13 18 18 O 1.43645 * 105.13694 * 323.55421 * 17 16 14 19 19 C 1.43233 * 109.97110 * 24.43052 * 18 17 16 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 26 26 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 27 27 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 28 28 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 29 29 H 1.09001 * 111.12897 * 270.24769 * 16 14 13 30 30 H 1.09006 * 111.12713 * 34.40550 * 16 14 13 31 31 H 1.09008 * 110.30914 * 204.64121 * 17 16 14 32 32 H 1.08999 * 110.39327 * 82.51793 * 17 16 14 33 33 H 1.09008 * 109.83100 * 238.77752 * 19 18 17 34 34 H 1.09000 * 109.90966 * 117.83980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 8 7.4907 -4.0788 0.0046 14 6 8.0720 -5.3843 0.0057 15 1 7.4397 -6.0890 -0.5345 16 6 9.5055 -5.3516 -0.5907 17 6 10.1550 -6.5545 0.1386 18 8 9.5958 -6.5375 1.4616 19 6 8.3284 -5.8704 1.4484 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.9157 -2.1230 -0.8865 26 1 5.9143 -2.1221 0.8934 27 1 5.6977 -4.5926 0.8938 28 1 5.6990 -4.5929 -0.8862 29 1 9.4861 -5.5097 -1.6690 30 1 10.0136 -4.4200 -0.3413 31 1 11.2371 -6.4303 0.1836 32 1 9.9026 -7.4865 -0.3670 33 1 8.3522 -5.0177 2.1271 34 1 7.5419 -6.5618 1.7509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385894394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = -114.345677 kcal Electronic energy + Delta-G solvation = -13954.134089 eV Core-core repulsion = 11465.425439 eV Total energy + Delta-G solvation = -2488.708650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.82895 -37.49536 -34.77042 -32.46205 -31.48376 -29.45659 -28.58803 -24.92982 -22.78082 -21.76982 -21.48457 -20.05738 -17.45662 -16.87279 -16.57901 -15.73223 -15.49657 -15.01896 -14.28991 -13.85817 -13.75851 -13.37907 -12.80621 -12.55296 -12.19652 -11.89633 -11.82698 -11.55706 -11.24427 -11.02673 -10.73565 -10.66161 -9.91890 -9.82901 -9.72338 -9.58728 -9.58282 -9.17401 -8.53018 -6.03762 -4.01802 3.31901 3.33638 3.39283 3.43787 3.75123 4.18367 4.46356 4.59910 4.68929 4.84968 4.97082 5.22482 5.29090 5.30845 5.38095 5.44563 5.46648 5.60973 5.65083 5.70014 5.96083 5.98478 6.30465 6.59400 6.66252 6.69302 6.87477 7.17376 7.30961 7.44062 7.80402 8.54530 9.00944 9.58990 11.09753 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.078443 B = 0.004281 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.860067 B = 6539.034256 C = 6679.552390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.059 3.941 13 O -0.373 6.373 14 C 0.055 3.945 15 H 0.078 0.922 16 C -0.153 4.153 17 C 0.051 3.949 18 O -0.382 6.382 19 C 0.027 3.973 20 H 0.263 0.737 21 H 0.016 0.984 22 H 0.012 0.988 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.392 -11.365 -0.837 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.157 4.157 12 C -0.017 4.017 13 O -0.292 6.292 14 C -0.003 4.003 15 H 0.095 0.905 16 C -0.191 4.191 17 C -0.025 4.025 18 O -0.301 6.301 19 C -0.050 4.050 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.429 -11.163 -0.651 21.555 hybrid contribution -0.021 0.756 -0.225 0.789 sum 18.407 -10.407 -0.876 21.164 Atomic orbital electron populations 1.69919 1.06320 1.26886 1.51282 1.25047 0.94746 0.99241 0.94565 0.86759 0.80379 0.83529 0.78518 1.20295 1.21395 1.18963 1.21165 0.89584 0.94453 1.50726 0.91088 1.19567 0.97033 0.92174 0.96351 1.21403 0.90932 1.00244 1.01203 1.21678 0.97583 0.93641 1.02792 1.22792 0.79193 0.99569 1.00099 1.87959 1.21014 1.25450 1.94760 1.23621 0.95130 0.86481 0.95103 0.90451 1.23310 0.94526 1.00133 1.01128 1.23341 0.98852 0.97166 0.83159 1.88418 1.34324 1.78790 1.28571 1.23702 0.85914 0.97427 0.97996 0.92755 0.96550 0.96992 0.92698 0.92652 0.91627 0.91591 0.93251 0.93194 0.89303 0.89137 0.89329 0.91957 0.90030 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.09 16 11 C -0.12 -1.95 5.58 -26.73 -0.15 -2.09 16 12 C 0.06 0.82 5.81 37.16 0.22 1.03 16 13 O -0.37 -5.08 10.08 -35.23 -0.36 -5.44 16 14 C 0.06 0.60 3.45 -24.78 -0.09 0.51 16 15 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 16 C -0.15 -1.37 6.89 -24.49 -0.17 -1.54 16 17 C 0.05 0.43 7.78 38.18 0.30 0.73 16 18 O -0.38 -4.44 11.36 -35.23 -0.40 -4.84 16 19 C 0.03 0.29 7.58 37.88 0.29 0.58 16 20 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 21 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 22 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.95 8.05 -51.92 -0.42 0.53 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 281.57 15.07 4.24 4.24 Total: -1.00 -31.58 281.57 -6.52 -38.10 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -5.83 Total: -5.08 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.28 Total: -16.89 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.76 Total: -10.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.58 -6.52 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.242 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds