Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.42902 * 114.00186 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.75059 * 32.01689 * 14 13 12 16 16 C 1.55299 * 110.85069 * 155.71189 * 14 13 12 17 17 C 1.54944 * 100.94278 * 152.32356 * 16 14 13 18 18 O 1.43645 * 105.13694 * 323.55421 * 17 16 14 19 19 C 1.43233 * 109.97110 * 24.43052 * 18 17 16 20 20 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 26 26 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 27 27 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 28 28 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 29 29 H 1.09001 * 111.12897 * 270.24769 * 16 14 13 30 30 H 1.09006 * 111.12713 * 34.40550 * 16 14 13 31 31 H 1.09008 * 110.30914 * 204.64121 * 17 16 14 32 32 H 1.08999 * 110.39327 * 82.51793 * 17 16 14 33 33 H 1.09008 * 109.83100 * 238.77752 * 19 18 17 34 34 H 1.09000 * 109.90966 * 117.83980 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 8 7.4907 -4.0788 0.0046 14 6 8.0720 -5.3843 0.0057 15 1 7.4397 -6.0890 -0.5345 16 6 9.5055 -5.3516 -0.5907 17 6 10.1550 -6.5545 0.1386 18 8 9.5958 -6.5375 1.4616 19 6 8.3284 -5.8704 1.4484 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6587 -3.1509 -0.8875 24 1 3.6580 -3.1497 0.8925 25 1 5.9157 -2.1230 -0.8865 26 1 5.9143 -2.1221 0.8934 27 1 5.6977 -4.5926 0.8938 28 1 5.6990 -4.5929 -0.8862 29 1 9.4861 -5.5097 -1.6690 30 1 10.0136 -4.4200 -0.3413 31 1 11.2371 -6.4303 0.1836 32 1 9.9026 -7.4865 -0.3670 33 1 8.3522 -5.0177 2.1271 34 1 7.5419 -6.5618 1.7509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385894394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = -135.372604 kcal Electronic energy + Delta-G solvation = -13955.045885 eV Core-core repulsion = 11465.425439 eV Total energy + Delta-G solvation = -2489.620446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64399 -38.49032 -36.40477 -34.41070 -32.45918 -30.86068 -29.61623 -26.60431 -23.65616 -22.95170 -22.58208 -21.68182 -18.87047 -18.31866 -17.59642 -16.80577 -16.53007 -16.26221 -15.84906 -15.19434 -14.85759 -14.72699 -14.17098 -13.88784 -13.61588 -13.21127 -13.05338 -12.77656 -12.50644 -12.29482 -12.11025 -11.78180 -11.67972 -11.45183 -11.38920 -11.28293 -10.76575 -10.63432 -10.50884 -8.29947 -6.34138 1.36167 1.38091 1.50491 2.36395 2.43833 2.98120 3.05514 3.43555 3.84140 3.93372 4.06563 4.07296 4.21442 4.31599 4.42904 4.50893 4.56415 4.67122 4.72963 4.80286 4.84237 4.91996 5.02913 5.11138 5.13300 5.18773 5.53770 5.61830 5.67180 5.92425 6.19738 6.28570 6.74161 7.30850 8.86904 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.078443 B = 0.004281 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.860067 B = 6539.034256 C = 6679.552390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.032 0.968 9 C -0.014 4.014 10 C -0.093 4.093 11 C -0.111 4.111 12 C 0.065 3.935 13 O -0.388 6.388 14 C 0.049 3.951 15 H 0.093 0.907 16 C -0.150 4.150 17 C 0.048 3.952 18 O -0.404 6.404 19 C 0.026 3.974 20 H 0.266 0.734 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.504 -11.326 -1.340 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.149 4.149 12 C -0.011 4.011 13 O -0.308 6.308 14 C -0.009 4.009 15 H 0.111 0.889 16 C -0.187 4.187 17 C -0.028 4.028 18 O -0.324 6.324 19 C -0.051 4.051 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.561 -11.145 -1.158 23.416 hybrid contribution -0.708 0.649 -0.069 0.963 sum 19.853 -10.496 -1.226 22.491 Atomic orbital electron populations 1.70072 1.08322 1.28193 1.52760 1.26060 0.95654 1.03670 0.94120 0.85622 0.79442 0.78105 0.79271 1.19045 1.20926 1.17090 1.21550 0.92285 0.93142 1.50307 0.94929 1.19548 0.93737 0.95300 0.96555 1.21247 0.93444 0.97279 1.01120 1.21486 0.94869 0.95705 1.02802 1.22631 0.79668 0.97744 1.01096 1.87917 1.20631 1.27322 1.94918 1.23842 0.96214 0.85553 0.95328 0.88872 1.23332 0.93149 0.99957 1.02267 1.23559 0.99609 0.97730 0.81889 1.88390 1.34597 1.78876 1.30528 1.23686 0.86147 0.97243 0.98035 0.92484 0.96293 0.96278 0.92744 0.92918 0.91456 0.91756 0.92512 0.92015 0.87389 0.90076 0.87867 0.90224 0.91357 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 10 C -0.09 -3.55 5.15 30.59 0.16 -3.39 16 11 C -0.11 -3.40 5.58 30.59 0.17 -3.23 16 12 C 0.06 1.63 5.81 71.98 0.42 2.05 16 13 O -0.39 -9.80 10.08 -148.98 -1.50 -11.30 16 14 C 0.05 0.95 3.45 31.86 0.11 1.06 16 15 H 0.09 1.51 7.89 -2.39 -0.02 1.49 16 16 C -0.15 -2.32 6.89 32.05 0.22 -2.09 16 17 C 0.05 0.69 7.78 72.65 0.56 1.26 16 18 O -0.40 -8.78 11.36 -148.98 -1.69 -10.47 16 19 C 0.03 0.53 7.58 72.45 0.55 1.08 16 20 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 21 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 22 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.55 8.05 -2.38 -0.02 1.53 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -67.84 281.57 3.00 -64.84 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.98 Total: 4.78 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.02 Total: -34.34 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -3.19 Total: -21.77 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -67.84 3.00 -64.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385894394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.530 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds