Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47061 * 2 1 4 4 H 1.09002 * 109.46648 * 54.88619 * 3 2 1 5 5 O 1.42900 * 109.47219 * 294.88895 * 3 2 1 6 6 C 1.42900 * 114.00102 * 100.74303 * 5 3 2 7 7 C 1.53002 * 109.47055 * 174.88729 * 3 2 1 8 8 H 1.08995 * 110.27480 * 297.09037 * 7 3 2 9 9 C 1.54948 * 110.30821 * 174.99838 * 7 3 2 10 10 C 1.55300 * 100.94372 * 204.63891 * 9 7 3 11 11 C 1.54383 * 102.24844 * 34.13349 * 10 9 7 12 12 H 1.09008 * 109.82686 * 98.15769 * 11 10 9 13 13 C 1.50702 * 109.83237 * 219.03706 * 11 10 9 14 14 H 1.08002 * 119.99805 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00146 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00219 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00094 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46888 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47223 * 119.99810 * 17 15 13 20 20 H 1.48503 * 109.47131 * 240.00209 * 17 15 13 21 21 O 1.43233 * 107.59453 * 338.64651 * 11 10 9 22 22 H 1.09006 * 109.47023 * 185.85424 * 1 2 3 23 23 H 1.09007 * 109.47138 * 305.85231 * 1 2 3 24 24 H 1.09001 * 109.47428 * 65.85090 * 1 2 3 25 25 H 1.09000 * 109.46922 * 240.00346 * 2 1 3 26 26 H 1.09000 * 109.47713 * 120.00258 * 2 1 3 27 27 H 1.08995 * 109.46901 * 174.43092 * 6 5 3 28 28 H 1.08996 * 109.47315 * 294.43725 * 6 5 3 29 29 H 1.09001 * 109.46674 * 54.43599 * 6 5 3 30 30 H 1.08997 * 111.12302 * 322.56456 * 9 7 3 31 31 H 1.09007 * 111.11923 * 86.71819 * 9 7 3 32 32 H 1.09000 * 110.84947 * 152.32530 * 10 9 7 33 33 H 1.08998 * 110.84685 * 275.74741 * 10 9 7 34 34 H 0.97001 * 120.00543 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6037 1.9821 0.8407 5 8 1.6642 2.0807 -1.2221 6 6 0.5231 2.9330 -1.1059 7 6 3.5646 1.4445 0.1286 8 1 3.8639 1.0066 1.0807 9 6 4.1129 2.8884 0.0045 10 6 5.5615 2.6128 -0.4829 11 6 5.3776 1.3580 -1.3633 12 1 5.3163 1.6481 -2.4123 13 6 6.5368 0.4167 -1.1603 14 1 7.3303 0.6770 -0.4754 15 6 6.5850 -0.7764 -1.8496 16 7 5.6196 -1.0928 -2.6848 17 14 8.0223 -1.9429 -1.5985 18 1 8.9683 -1.3581 -0.6145 19 1 7.5204 -3.2442 -1.0888 20 1 8.7205 -2.1539 -2.8921 21 8 4.1578 0.7230 -0.9628 22 1 -0.3633 -1.0224 0.1048 23 1 -0.3634 0.6019 0.8330 24 1 -0.3634 0.4204 -0.9377 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.3619 3.4549 -2.0491 28 1 -0.3554 2.3335 -0.8675 29 1 0.6926 3.6607 -0.3123 30 1 3.5515 3.4596 -0.7348 31 1 4.1128 3.3929 0.9708 32 1 5.9380 3.4487 -1.0726 33 1 6.2215 2.4061 0.3595 34 1 5.6533 -1.9323 -3.1695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386510171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = -103.046098 kcal Electronic energy + Delta-G solvation = -15303.743363 eV Core-core repulsion = 12815.524699 eV Total energy + Delta-G solvation = -2488.218664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80650 -36.91003 -32.99906 -32.32002 -30.74165 -29.32976 -26.80576 -25.35677 -23.48415 -21.18182 -20.24377 -19.69820 -16.54077 -16.38779 -15.61331 -14.99119 -14.64259 -14.28262 -13.78256 -13.28631 -12.92096 -12.49234 -12.19000 -12.01821 -11.95539 -11.64680 -11.14812 -10.92296 -10.85489 -10.51141 -10.40905 -10.26745 -10.16509 -9.97780 -9.60833 -9.10401 -8.93206 -8.43978 -7.66951 -5.88169 -4.02434 3.34703 3.42340 3.45879 4.25105 4.50083 4.97832 5.21026 5.36283 5.46476 5.55144 5.56026 5.62381 5.65907 5.75328 5.85906 5.86612 6.07651 6.13653 6.28021 6.35256 6.45389 6.49364 6.66645 6.75480 6.82466 6.90914 6.97691 7.70943 7.80848 7.98766 8.40467 8.74153 9.16687 9.68736 11.17876 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.009231 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.446956 B = 3032.505554 C = 3443.628210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C 0.096 3.904 4 H 0.055 0.945 5 O -0.362 6.362 6 C 0.025 3.975 7 C 0.075 3.925 8 H 0.060 0.940 9 C -0.152 4.152 10 C -0.144 4.144 11 C 0.208 3.792 12 H 0.037 0.963 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.079 3.921 16 N -0.861 5.861 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.343 6.343 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 5.930 5.719 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.038 3.962 4 H 0.073 0.927 5 O -0.281 6.281 6 C -0.072 4.072 7 C 0.016 3.984 8 H 0.077 0.923 9 C -0.189 4.189 10 C -0.181 4.181 11 C 0.153 3.847 12 H 0.055 0.945 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.127 4.127 16 N -0.497 5.497 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.262 6.262 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.765 5.585 5.313 11.672 hybrid contribution 0.659 -0.445 0.511 0.945 sum -8.106 5.140 5.823 11.226 Atomic orbital electron populations 1.21857 0.96842 1.01089 1.01020 1.21874 0.94632 0.97179 1.03915 1.22389 0.95047 0.92782 0.85950 0.92674 1.88101 1.46074 1.61715 1.32190 1.22864 0.89314 0.93479 1.01540 1.22883 0.90570 0.91587 0.93397 0.92282 1.23210 0.97829 0.97552 1.00357 1.23177 0.94916 0.99732 1.00317 1.20241 0.83145 0.87925 0.93413 0.94546 1.21458 1.05756 1.04730 1.26303 0.92421 1.25055 0.95392 0.97818 0.94423 1.70066 1.31277 1.22731 1.25622 0.86660 0.82831 0.81193 0.77952 1.19786 1.20968 1.20980 1.88774 1.38739 1.50852 1.47833 0.93031 0.93750 0.92555 0.89415 0.91596 0.90359 0.94341 0.94803 0.90861 0.92480 0.92502 0.91910 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.85 37.16 0.33 -1.76 16 2 C -0.14 -2.41 5.43 -26.73 -0.15 -2.56 16 3 C 0.10 1.71 2.21 -26.73 -0.06 1.65 16 4 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 5 O -0.36 -6.76 9.04 -42.41 -0.38 -7.14 16 6 C 0.03 0.34 10.48 101.05 1.06 1.40 16 7 C 0.07 1.56 3.30 -25.70 -0.08 1.48 16 8 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 9 C -0.15 -2.88 6.51 -24.48 -0.16 -3.04 16 10 C -0.14 -3.11 6.52 -24.79 -0.16 -3.27 16 11 C 0.21 5.61 3.35 -27.16 -0.09 5.52 16 12 H 0.04 1.08 8.14 -51.92 -0.42 0.66 16 13 C -0.54 -15.76 8.75 -34.44 -0.30 -16.06 16 14 H 0.06 1.62 7.52 -52.49 -0.39 1.23 16 15 C 0.08 2.30 5.41 -17.82 -0.10 2.20 16 16 N -0.86 -26.38 12.93 55.43 0.72 -25.66 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 O -0.34 -9.17 9.60 -42.41 -0.41 -9.58 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.06 0.79 6.58 -51.93 -0.34 0.44 16 25 H 0.09 1.86 7.86 -51.93 -0.41 1.45 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.46 5.99 -51.93 -0.31 0.15 16 29 H 0.03 0.40 7.99 -51.93 -0.41 -0.01 16 30 H 0.07 1.38 7.22 -51.93 -0.37 1.01 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.34 7.67 -51.93 -0.40 0.94 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -31.93 275.12 -6.21 -38.14 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.56 Total: -2.34 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.29 Total: -14.44 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.72 Total: -25.66 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.79 Total: -16.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.93 -6.21 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386510171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.904 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds