Wall clock time and date at job start Mon Mar 30 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47061 * 2 1 4 4 H 1.09002 * 109.46648 * 54.88619 * 3 2 1 5 5 O 1.42900 * 109.47219 * 294.88895 * 3 2 1 6 6 C 1.42900 * 114.00102 * 100.74303 * 5 3 2 7 7 C 1.53002 * 109.47055 * 174.88729 * 3 2 1 8 8 H 1.08995 * 110.27480 * 297.09037 * 7 3 2 9 9 C 1.54948 * 110.30821 * 174.99838 * 7 3 2 10 10 C 1.55300 * 100.94372 * 204.63891 * 9 7 3 11 11 C 1.54383 * 102.24844 * 34.13349 * 10 9 7 12 12 H 1.09008 * 109.82686 * 98.15769 * 11 10 9 13 13 C 1.50702 * 109.83237 * 219.03706 * 11 10 9 14 14 H 1.08002 * 119.99805 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00146 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00219 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00094 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46888 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47223 * 119.99810 * 17 15 13 20 20 H 1.48503 * 109.47131 * 240.00209 * 17 15 13 21 21 O 1.43233 * 107.59453 * 338.64651 * 11 10 9 22 22 H 1.09006 * 109.47023 * 185.85424 * 1 2 3 23 23 H 1.09007 * 109.47138 * 305.85231 * 1 2 3 24 24 H 1.09001 * 109.47428 * 65.85090 * 1 2 3 25 25 H 1.09000 * 109.46922 * 240.00346 * 2 1 3 26 26 H 1.09000 * 109.47713 * 120.00258 * 2 1 3 27 27 H 1.08995 * 109.46901 * 174.43092 * 6 5 3 28 28 H 1.08996 * 109.47315 * 294.43725 * 6 5 3 29 29 H 1.09001 * 109.46674 * 54.43599 * 6 5 3 30 30 H 1.08997 * 111.12302 * 322.56456 * 9 7 3 31 31 H 1.09007 * 111.11923 * 86.71819 * 9 7 3 32 32 H 1.09000 * 110.84947 * 152.32530 * 10 9 7 33 33 H 1.08998 * 110.84685 * 275.74741 * 10 9 7 34 34 H 0.97001 * 120.00543 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6037 1.9821 0.8407 5 8 1.6642 2.0807 -1.2221 6 6 0.5231 2.9330 -1.1059 7 6 3.5646 1.4445 0.1286 8 1 3.8639 1.0066 1.0807 9 6 4.1129 2.8884 0.0045 10 6 5.5615 2.6128 -0.4829 11 6 5.3776 1.3580 -1.3633 12 1 5.3163 1.6481 -2.4123 13 6 6.5368 0.4167 -1.1603 14 1 7.3303 0.6770 -0.4754 15 6 6.5850 -0.7764 -1.8496 16 7 5.6196 -1.0928 -2.6848 17 14 8.0223 -1.9429 -1.5985 18 1 8.9683 -1.3581 -0.6145 19 1 7.5204 -3.2442 -1.0888 20 1 8.7205 -2.1539 -2.8921 21 8 4.1578 0.7230 -0.9628 22 1 -0.3633 -1.0224 0.1048 23 1 -0.3634 0.6019 0.8330 24 1 -0.3634 0.4204 -0.9377 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.3619 3.4549 -2.0491 28 1 -0.3554 2.3335 -0.8675 29 1 0.6926 3.6607 -0.3123 30 1 3.5515 3.4596 -0.7348 31 1 4.1128 3.3929 0.9708 32 1 5.9380 3.4487 -1.0726 33 1 6.2215 2.4061 0.3595 34 1 5.6533 -1.9323 -3.1695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386510171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:45 Heat of formation + Delta-G solvation = -124.348465 kcal Electronic energy + Delta-G solvation = -15304.667103 eV Core-core repulsion = 12815.524699 eV Total energy + Delta-G solvation = -2489.142404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39023 -38.48553 -34.75941 -34.04193 -32.53930 -30.99182 -28.34119 -26.84692 -25.14637 -22.76242 -21.91581 -21.35132 -18.56795 -17.95298 -17.12794 -16.69058 -16.23202 -15.98591 -15.26931 -14.85918 -14.47071 -14.02694 -13.80345 -13.67152 -13.30410 -13.22918 -12.83228 -12.45471 -12.40176 -12.26477 -12.14206 -11.97603 -11.58917 -11.49273 -11.37705 -11.03920 -10.67144 -10.26555 -9.67104 -8.09210 -6.32170 1.39011 1.39781 1.52533 2.41667 3.01478 3.09313 3.54365 3.84779 4.00230 4.15299 4.23838 4.34583 4.40733 4.53804 4.60554 4.67004 4.73682 4.77786 4.87232 4.89315 4.99315 5.06182 5.13803 5.14359 5.32167 5.35175 5.49730 5.64492 5.79319 6.22497 6.49626 6.66606 7.13333 7.45502 8.97440 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.009231 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.446956 B = 3032.505554 C = 3443.628210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.101 3.899 4 H 0.095 0.905 5 O -0.400 6.400 6 C 0.018 3.982 7 C 0.057 3.943 8 H 0.062 0.938 9 C -0.135 4.135 10 C -0.138 4.138 11 C 0.200 3.800 12 H -0.009 1.009 13 C -0.564 4.564 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.903 5.903 17 Si 0.960 3.040 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.277 1.277 21 O -0.378 6.378 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 6.857 7.619 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.044 3.956 4 H 0.113 0.887 5 O -0.319 6.319 6 C -0.078 4.078 7 C -0.002 4.002 8 H 0.079 0.921 9 C -0.172 4.172 10 C -0.175 4.175 11 C 0.144 3.856 12 H 0.009 0.991 13 C -0.602 4.602 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.540 5.540 17 Si 0.785 3.215 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.202 1.202 21 O -0.298 6.298 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.337 6.532 7.225 13.493 hybrid contribution 0.776 -0.685 -0.085 1.038 sum -8.561 5.848 7.140 12.588 Atomic orbital electron populations 1.21780 0.93730 1.02331 1.02013 1.21832 0.97384 0.96886 1.01512 1.22342 0.92844 0.93258 0.87181 0.88683 1.88060 1.48171 1.62694 1.32962 1.23108 0.88213 0.93528 1.02965 1.23287 0.92861 0.92296 0.91709 0.92069 1.23135 0.95233 0.96533 1.02333 1.23060 0.97201 0.97631 0.99639 1.20107 0.83224 0.89995 0.92267 0.99091 1.21880 1.06661 1.05422 1.26218 0.92057 1.25980 0.98316 0.99773 0.94038 1.70228 1.33610 1.23334 1.26868 0.85504 0.79239 0.78523 0.78272 1.18503 1.20654 1.20216 1.88692 1.38730 1.52446 1.49955 0.92168 0.90880 0.92894 0.94560 0.91299 0.89584 0.92763 0.92613 0.90759 0.88391 0.91146 0.91470 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.85 71.98 0.64 -2.97 16 2 C -0.14 -4.78 5.43 30.60 0.17 -4.62 16 3 C 0.10 3.44 2.21 30.60 0.07 3.51 16 4 H 0.10 2.46 7.60 -2.39 -0.02 2.44 16 5 O -0.40 -14.49 9.04 -142.12 -1.28 -15.78 16 6 C 0.02 0.43 10.48 113.37 1.19 1.62 16 7 C 0.06 2.34 3.30 31.26 0.10 2.44 16 8 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 9 C -0.13 -4.82 6.51 32.05 0.21 -4.61 16 10 C -0.14 -5.87 6.52 31.85 0.21 -5.67 16 11 C 0.20 11.14 3.35 30.32 0.10 11.24 16 12 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 13 C -0.56 -33.40 8.75 25.60 0.22 -33.18 16 14 H 0.06 3.47 7.52 -2.91 -0.02 3.45 16 15 C 0.02 1.22 5.41 84.65 0.46 1.68 16 16 N -0.90 -57.52 12.93 21.45 0.28 -57.24 16 17 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 O -0.38 -20.95 9.60 -142.12 -1.36 -22.31 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.05 1.38 6.58 -2.39 -0.02 1.37 16 25 H 0.04 1.60 7.86 -2.39 -0.02 1.58 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.13 5.99 -2.39 -0.01 1.12 16 29 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 30 H 0.07 2.65 7.22 -2.39 -0.02 2.63 16 31 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.78 7.67 -2.39 -0.02 2.76 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.31 275.12 4.07 -68.24 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.05 Total: 9.89 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.36 Total: -30.56 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -2.65 Total: -38.09 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.31 4.07 -68.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386510171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.105 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds