Wall clock time and date at job start Mon Mar 30 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47022 * 2 1 4 4 H 1.08993 * 109.47030 * 55.00136 * 3 2 1 5 5 O 1.42901 * 109.47183 * 294.99909 * 3 2 1 6 6 C 1.42898 * 113.99907 * 118.34587 * 5 3 2 7 7 C 1.53000 * 109.46681 * 175.00329 * 3 2 1 8 8 H 1.09002 * 109.82804 * 61.27583 * 7 3 2 9 9 C 1.54384 * 109.82667 * 182.15820 * 7 3 2 10 10 C 1.55304 * 102.25166 * 140.86917 * 9 7 3 11 11 C 1.54942 * 100.94467 * 325.86593 * 10 9 7 12 12 H 1.09006 * 110.30820 * 277.43316 * 11 10 9 13 13 C 1.50697 * 110.30989 * 155.36102 * 11 10 9 14 14 H 1.07992 * 120.00427 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99546 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00384 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99658 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47304 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47300 * 119.99851 * 17 15 13 20 20 H 1.48500 * 109.46998 * 239.99951 * 17 15 13 21 21 O 1.43235 * 109.83266 * 300.29089 * 7 3 2 22 22 H 1.09003 * 109.47435 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47108 * 299.99582 * 1 2 3 24 24 H 1.08993 * 109.47747 * 59.99953 * 1 2 3 25 25 H 1.09001 * 109.46586 * 239.99857 * 2 1 3 26 26 H 1.08997 * 109.47177 * 120.00518 * 2 1 3 27 27 H 1.08996 * 109.47063 * 176.31192 * 6 5 3 28 28 H 1.09003 * 109.46919 * 296.31138 * 6 5 3 29 29 H 1.08999 * 109.46999 * 56.31102 * 6 5 3 30 30 H 1.09005 * 110.84564 * 259.05751 * 9 7 3 31 31 H 1.09006 * 110.84972 * 22.67769 * 9 7 3 32 32 H 1.09007 * 111.12506 * 83.78728 * 10 9 7 33 33 H 1.09000 * 111.12296 * 207.90335 * 10 9 7 34 34 H 0.96998 * 120.00419 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.8035 3.2102 -1.0449 7 6 3.5648 1.4442 0.1256 8 1 4.0065 0.9260 -0.7255 9 6 4.0840 2.8971 0.1810 10 6 5.2207 2.8010 1.2349 11 6 4.6430 1.7297 2.1937 12 1 3.9489 2.1876 2.8986 13 6 5.7568 1.0351 2.9340 14 1 6.7835 1.3159 2.7519 15 6 5.4649 0.0404 3.8431 16 7 4.2146 -0.3020 4.0645 17 14 6.8455 -0.8201 4.7613 18 1 8.1510 -0.2545 4.3356 19 1 6.6703 -0.6172 6.2219 20 1 6.8128 -2.2730 4.4558 21 8 3.9527 0.7992 1.3443 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.6154 3.6779 -2.0113 28 1 -0.1408 2.8839 -0.6091 29 1 1.2813 3.9296 -0.3799 30 1 4.4780 3.2054 -0.7875 31 1 3.3004 3.5766 0.5164 32 1 6.1507 2.4603 0.7797 33 1 5.3625 3.7524 1.7475 34 1 4.0093 -1.0020 4.7037 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386510173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:47 Heat of formation + Delta-G solvation = -108.184644 kcal Electronic energy + Delta-G solvation = -15209.650451 eV Core-core repulsion = 12721.208963 eV Total energy + Delta-G solvation = -2488.441488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90548 -37.03373 -33.07959 -32.41143 -30.84586 -29.22346 -26.92674 -25.36092 -23.54346 -21.17855 -20.32893 -19.79644 -16.79246 -16.36456 -15.49536 -14.95657 -14.72714 -14.37659 -13.87061 -13.48611 -13.11629 -12.50460 -12.20761 -11.98307 -11.94588 -11.66505 -11.13155 -10.92135 -10.85863 -10.55578 -10.45226 -10.32753 -10.24634 -10.17991 -9.70077 -9.11679 -9.07507 -8.54723 -7.84859 -6.01047 -4.13550 3.30270 3.38308 3.42061 4.07118 4.42913 5.01940 5.21872 5.39428 5.47227 5.53972 5.59723 5.62032 5.67891 5.76030 5.81944 5.85542 6.10903 6.21495 6.30762 6.36857 6.43140 6.52351 6.59821 6.64690 6.78348 6.86042 6.91091 7.52886 7.66919 7.89446 8.27060 8.64771 9.03352 9.57393 11.06566 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040071 B = 0.008789 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.594391 B = 3185.122698 C = 3695.042330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.083 3.917 4 H 0.061 0.939 5 O -0.385 6.385 6 C 0.033 3.967 7 C 0.068 3.932 8 H 0.064 0.936 9 C -0.146 4.146 10 C -0.148 4.148 11 C 0.209 3.791 12 H 0.027 0.973 13 C -0.532 4.532 14 H 0.063 0.937 15 C 0.077 3.923 16 N -0.864 5.864 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 O -0.350 6.350 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 4.725 -7.271 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.025 3.975 4 H 0.079 0.921 5 O -0.304 6.304 6 C -0.064 4.064 7 C 0.009 3.991 8 H 0.082 0.918 9 C -0.183 4.183 10 C -0.186 4.186 11 C 0.154 3.846 12 H 0.045 0.955 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.128 4.128 16 N -0.500 5.500 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 O -0.270 6.270 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.721 4.334 -7.286 10.228 hybrid contribution 0.525 -0.129 0.664 0.857 sum -5.196 4.205 -6.622 9.409 Atomic orbital electron populations 1.21741 0.96650 1.01102 1.00985 1.21765 0.95039 0.96297 1.03493 1.22618 0.95797 0.93417 0.85620 0.92082 1.87827 1.67273 1.44253 1.31040 1.22774 0.93327 0.88728 1.01572 1.22685 0.91965 0.92784 0.91679 0.91830 1.23045 0.98665 0.97095 0.99523 1.23342 0.97791 1.00349 0.97138 1.20552 0.90765 0.85798 0.87477 0.95494 1.21158 0.92479 1.21481 1.21838 0.91885 1.25081 0.95408 0.96331 0.96026 1.70033 1.17381 1.29217 1.33407 0.86563 0.82496 0.79636 0.79413 1.19639 1.20922 1.20827 1.88829 1.75782 1.36541 1.25856 0.93096 0.93299 0.93113 0.91974 0.89049 0.90363 0.94486 0.94275 0.91759 0.92311 0.91594 0.92079 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.81 37.16 0.36 -1.83 16 2 C -0.13 -2.31 5.56 -26.73 -0.15 -2.46 16 3 C 0.08 1.53 1.88 -26.73 -0.05 1.48 16 4 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 5 O -0.38 -6.39 9.59 -35.23 -0.34 -6.73 16 6 C 0.03 0.42 10.70 101.05 1.08 1.51 16 7 C 0.07 1.43 3.31 -26.01 -0.09 1.34 16 8 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 9 C -0.15 -2.73 6.27 -24.78 -0.16 -2.89 16 10 C -0.15 -3.15 6.53 -24.48 -0.16 -3.31 16 11 C 0.21 5.45 3.22 -26.86 -0.09 5.36 16 12 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.53 -15.07 8.79 -34.44 -0.30 -15.37 16 14 H 0.06 1.74 7.75 -52.49 -0.41 1.33 16 15 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 16 N -0.86 -25.60 13.05 55.43 0.72 -24.87 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 O -0.35 -9.10 9.63 -35.23 -0.34 -9.44 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.71 7.81 -51.93 -0.41 0.30 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.04 0.49 7.53 -51.93 -0.39 0.10 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.03 7.23 -51.93 -0.38 0.66 16 32 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 279.71 15.07 4.22 4.22 Total: -1.00 -30.13 279.71 -6.12 -36.26 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.72 Total: -1.81 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 0.36 Total: -14.06 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.72 Total: -24.87 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.68 Total: -16.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.13 -6.12 -36.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386510173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.929 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds