Wall clock time and date at job start Mon Mar 30 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.09000 * 109.46772 * 55.19633 * 3 2 1 5 5 O 1.42899 * 109.47182 * 295.19889 * 3 2 1 6 6 C 1.42901 * 114.00294 * 115.41175 * 5 3 2 7 7 C 1.52998 * 109.47103 * 175.19783 * 3 2 1 8 8 H 1.08992 * 110.42179 * 57.69111 * 7 3 2 9 9 C 1.54479 * 110.36961 * 180.02562 * 7 3 2 10 10 C 1.54504 * 104.06436 * 142.80987 * 9 7 3 11 11 C 1.54479 * 104.06278 * 359.97438 * 10 9 7 12 12 H 1.09000 * 110.37335 * 94.96251 * 11 10 9 13 13 C 1.50702 * 110.37412 * 217.19141 * 11 10 9 14 14 H 1.08008 * 119.99523 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00317 * 180.27630 * 13 11 10 16 16 N 1.31515 * 119.99708 * 359.72295 * 15 13 11 17 17 Si 1.86799 * 120.00183 * 179.72795 * 15 13 11 18 18 H 1.48495 * 109.47206 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47124 * 119.99787 * 17 15 13 20 20 H 1.48501 * 109.46742 * 239.99568 * 17 15 13 21 21 O 1.44423 * 104.80089 * 336.02049 * 11 10 9 22 22 H 1.08999 * 109.47233 * 174.12805 * 1 2 3 23 23 H 1.09005 * 109.47232 * 294.12523 * 1 2 3 24 24 H 1.09003 * 109.47216 * 54.12515 * 1 2 3 25 25 H 1.09003 * 109.46598 * 240.00194 * 2 1 3 26 26 H 1.08997 * 109.46920 * 120.00246 * 2 1 3 27 27 H 1.09000 * 109.46802 * 305.33602 * 6 5 3 28 28 H 1.09007 * 109.47028 * 65.33177 * 6 5 3 29 29 H 1.08993 * 109.47628 * 185.33257 * 6 5 3 30 30 H 1.08999 * 110.51643 * 24.16319 * 9 7 3 31 31 H 1.09005 * 110.50682 * 261.44818 * 9 7 3 32 32 H 1.09000 * 110.51568 * 241.35041 * 10 9 7 33 33 H 1.09002 * 110.51541 * 118.63923 * 10 9 7 34 34 H 0.97002 * 119.99812 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6081 1.9805 0.8438 5 8 1.6580 2.0828 -1.2190 6 6 0.7477 3.1704 -1.0440 7 6 3.5652 1.4441 0.1208 8 1 4.0118 0.8747 -0.6942 9 6 4.1028 2.8924 0.1234 10 6 5.2773 2.8550 1.1266 11 6 5.3100 1.3888 1.6119 12 1 6.0255 0.8112 1.0266 13 6 5.6612 1.3285 3.0761 14 1 5.8473 2.2400 3.6248 15 6 5.7511 0.1094 3.7139 16 7 5.5249 -1.0005 3.0457 17 14 6.1939 0.0343 5.5271 18 1 6.3981 1.4112 6.0443 19 1 5.0925 -0.6191 6.2790 20 1 7.4436 -0.7491 5.6993 21 8 3.9687 0.8987 1.3960 22 1 -0.3633 -1.0223 -0.1051 23 1 -0.3634 0.4201 0.9379 24 1 -0.3634 0.6022 -0.8327 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 -0.1246 2.8280 -0.4872 28 1 1.2400 3.9709 -0.4917 29 1 0.4334 3.5418 -2.0192 30 1 3.3327 3.5851 0.4627 31 1 4.4572 3.1699 -0.8693 32 1 5.0879 3.5292 1.9618 33 1 6.2123 3.1141 0.6299 34 1 5.5878 -1.8582 3.4945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386510174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:49 Heat of formation + Delta-G solvation = -107.824509 kcal Electronic energy + Delta-G solvation = -15150.333824 eV Core-core repulsion = 12661.907953 eV Total energy + Delta-G solvation = -2488.425871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.85693 -37.09570 -33.11983 -32.43203 -30.78314 -29.26240 -26.96207 -25.39966 -23.52412 -21.21408 -20.35630 -19.76270 -16.87778 -16.34688 -15.35799 -15.06460 -14.59322 -14.34689 -13.73065 -13.62735 -13.18461 -12.83656 -12.47104 -12.04004 -11.84311 -11.56747 -11.21081 -10.93926 -10.84735 -10.62253 -10.45946 -10.38043 -10.14065 -10.00371 -9.58856 -9.17542 -8.96914 -8.60324 -8.06999 -6.02248 -4.14661 3.29562 3.37377 3.41231 3.98152 4.41812 5.08327 5.12796 5.36168 5.43806 5.52765 5.55114 5.65199 5.67142 5.76904 5.80350 5.84504 6.05910 6.17055 6.29809 6.37847 6.45336 6.47345 6.57572 6.71939 6.81141 6.85307 6.87370 7.48412 7.59648 7.88499 8.23005 8.54723 8.97014 9.55862 11.05709 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.008635 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.338351 B = 3241.673447 C = 3687.325631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.100 3.900 4 H 0.065 0.935 5 O -0.383 6.383 6 C 0.032 3.968 7 C 0.060 3.940 8 H 0.055 0.945 9 C -0.142 4.142 10 C -0.148 4.148 11 C 0.206 3.794 12 H 0.027 0.973 13 C -0.528 4.528 14 H 0.064 0.936 15 C 0.076 3.924 16 N -0.864 5.864 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 O -0.347 6.347 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 5.209 -6.154 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.083 0.917 5 O -0.302 6.302 6 C -0.064 4.064 7 C 0.001 3.999 8 H 0.073 0.927 9 C -0.180 4.180 10 C -0.186 4.186 11 C 0.151 3.849 12 H 0.045 0.955 13 C -0.565 4.565 14 H 0.082 0.918 15 C -0.130 4.130 16 N -0.500 5.500 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 O -0.267 6.267 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.677 4.817 -6.177 10.968 hybrid contribution 0.194 0.166 1.027 1.058 sum -7.483 4.983 -5.151 10.361 Atomic orbital electron populations 1.21763 0.96512 1.01268 1.01091 1.21823 0.95168 0.96325 1.03580 1.22087 0.94304 0.93373 0.85945 0.91686 1.87834 1.64050 1.47347 1.30943 1.22796 0.92469 0.89486 1.01695 1.22894 0.92744 0.93234 0.91069 0.92743 1.22847 0.98443 0.97569 0.99115 1.23056 0.96352 1.01555 0.97634 1.20530 0.81379 0.86674 0.96327 0.95490 1.21088 1.48262 0.92782 0.94404 0.91799 1.25100 0.93904 0.95768 0.98227 1.70045 1.46500 0.97501 1.35990 0.86543 0.78036 0.78219 0.85212 1.19625 1.20831 1.20864 1.89454 1.33485 1.71877 1.31874 0.92986 0.93253 0.92926 0.91705 0.89349 0.94261 0.94281 0.90256 0.92586 0.92210 0.91904 0.92752 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.79 37.16 0.36 -1.74 16 2 C -0.13 -2.28 5.59 -26.73 -0.15 -2.43 16 3 C 0.10 1.82 1.92 -26.73 -0.05 1.77 16 4 H 0.07 1.18 7.61 -51.93 -0.40 0.78 16 5 O -0.38 -6.25 9.49 -35.23 -0.33 -6.58 16 6 C 0.03 0.40 10.45 101.05 1.06 1.46 16 7 C 0.06 1.27 3.03 -25.96 -0.08 1.19 16 8 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 9 C -0.14 -2.73 6.33 -25.17 -0.16 -2.89 16 10 C -0.15 -3.20 6.62 -25.17 -0.17 -3.37 16 11 C 0.21 5.45 3.06 -27.11 -0.08 5.37 16 12 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.53 -15.03 8.77 -34.44 -0.30 -15.33 16 14 H 0.06 1.77 7.57 -52.48 -0.40 1.37 16 15 C 0.08 2.16 5.44 -17.82 -0.10 2.06 16 16 N -0.86 -25.76 13.07 55.43 0.72 -25.04 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 O -0.35 -9.10 10.24 -35.23 -0.36 -9.46 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.69 6.98 -51.93 -0.36 0.33 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.09 1.75 7.73 -51.93 -0.40 1.35 16 27 H 0.04 0.45 7.61 -51.93 -0.40 0.05 16 28 H 0.04 0.48 7.89 -51.93 -0.41 0.07 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.00 7.62 -51.93 -0.40 0.61 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.35 7.70 -51.93 -0.40 0.95 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 278.79 15.07 4.20 4.20 Total: -1.00 -30.41 278.79 -6.13 -36.54 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.67 Total: -2.20 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 0.33 Total: -13.92 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.72 Total: -25.04 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.70 Total: -16.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.41 -6.13 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386510174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.280 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds