Wall clock time and date at job start Mon Mar 30 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47242 * 2 1 4 4 H 1.09000 * 109.46772 * 55.19633 * 3 2 1 5 5 O 1.42899 * 109.47182 * 295.19889 * 3 2 1 6 6 C 1.42901 * 114.00294 * 115.41175 * 5 3 2 7 7 C 1.52998 * 109.47103 * 175.19783 * 3 2 1 8 8 H 1.08992 * 110.42179 * 57.69111 * 7 3 2 9 9 C 1.54479 * 110.36961 * 180.02562 * 7 3 2 10 10 C 1.54504 * 104.06436 * 142.80987 * 9 7 3 11 11 C 1.54479 * 104.06278 * 359.97438 * 10 9 7 12 12 H 1.09000 * 110.37335 * 94.96251 * 11 10 9 13 13 C 1.50702 * 110.37412 * 217.19141 * 11 10 9 14 14 H 1.08008 * 119.99523 * 359.97438 * 13 11 10 15 15 C 1.37874 * 120.00317 * 180.27630 * 13 11 10 16 16 N 1.31515 * 119.99708 * 359.72295 * 15 13 11 17 17 Si 1.86799 * 120.00183 * 179.72795 * 15 13 11 18 18 H 1.48495 * 109.47206 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47124 * 119.99787 * 17 15 13 20 20 H 1.48501 * 109.46742 * 239.99568 * 17 15 13 21 21 O 1.44423 * 104.80089 * 336.02049 * 11 10 9 22 22 H 1.08999 * 109.47233 * 174.12805 * 1 2 3 23 23 H 1.09005 * 109.47232 * 294.12523 * 1 2 3 24 24 H 1.09003 * 109.47216 * 54.12515 * 1 2 3 25 25 H 1.09003 * 109.46598 * 240.00194 * 2 1 3 26 26 H 1.08997 * 109.46920 * 120.00246 * 2 1 3 27 27 H 1.09000 * 109.46802 * 305.33602 * 6 5 3 28 28 H 1.09007 * 109.47028 * 65.33177 * 6 5 3 29 29 H 1.08993 * 109.47628 * 185.33257 * 6 5 3 30 30 H 1.08999 * 110.51643 * 24.16319 * 9 7 3 31 31 H 1.09005 * 110.50682 * 261.44818 * 9 7 3 32 32 H 1.09000 * 110.51568 * 241.35041 * 10 9 7 33 33 H 1.09002 * 110.51541 * 118.63923 * 10 9 7 34 34 H 0.97002 * 119.99812 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6081 1.9805 0.8438 5 8 1.6580 2.0828 -1.2190 6 6 0.7477 3.1704 -1.0440 7 6 3.5652 1.4441 0.1208 8 1 4.0118 0.8747 -0.6942 9 6 4.1028 2.8924 0.1234 10 6 5.2773 2.8550 1.1266 11 6 5.3100 1.3888 1.6119 12 1 6.0255 0.8112 1.0266 13 6 5.6612 1.3285 3.0761 14 1 5.8473 2.2400 3.6248 15 6 5.7511 0.1094 3.7139 16 7 5.5249 -1.0005 3.0457 17 14 6.1939 0.0343 5.5271 18 1 6.3981 1.4112 6.0443 19 1 5.0925 -0.6191 6.2790 20 1 7.4436 -0.7491 5.6993 21 8 3.9687 0.8987 1.3960 22 1 -0.3633 -1.0223 -0.1051 23 1 -0.3634 0.4201 0.9379 24 1 -0.3634 0.6022 -0.8327 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 -0.1246 2.8280 -0.4872 28 1 1.2400 3.9709 -0.4917 29 1 0.4334 3.5418 -2.0192 30 1 3.3327 3.5851 0.4627 31 1 4.4572 3.1699 -0.8693 32 1 5.0879 3.5292 1.9618 33 1 6.2123 3.1141 0.6299 34 1 5.5878 -1.8582 3.4945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386510174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:49 Heat of formation + Delta-G solvation = -127.540987 kcal Electronic energy + Delta-G solvation = -15151.188795 eV Core-core repulsion = 12661.907953 eV Total energy + Delta-G solvation = -2489.280842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45470 -38.64153 -34.86018 -34.13396 -32.58565 -30.95625 -28.42517 -26.86529 -25.17754 -22.90013 -21.90853 -21.50071 -18.85430 -17.82448 -16.93149 -16.75274 -16.27049 -15.87533 -15.51662 -15.04940 -14.56631 -14.36986 -14.10123 -13.71161 -13.30535 -13.14722 -12.85154 -12.45011 -12.38889 -12.20794 -12.18948 -11.88930 -11.76200 -11.61196 -11.34210 -11.07958 -10.74342 -10.38325 -10.06717 -8.18139 -6.39043 1.40103 1.41030 1.54053 2.39372 2.64362 3.11743 3.65212 3.75630 4.01454 4.12844 4.22243 4.22758 4.41683 4.50353 4.56494 4.58867 4.71184 4.76222 4.83847 4.86543 4.98035 5.05824 5.08610 5.15617 5.17883 5.24221 5.43839 5.48568 5.71677 6.13138 6.27907 6.52983 6.88015 7.36524 8.90806 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037811 B = 0.008635 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.338351 B = 3241.673447 C = 3687.325631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.113 3.887 4 H 0.065 0.935 5 O -0.391 6.391 6 C 0.022 3.978 7 C 0.049 3.951 8 H 0.041 0.959 9 C -0.129 4.129 10 C -0.141 4.141 11 C 0.197 3.803 12 H -0.009 1.009 13 C -0.551 4.551 14 H 0.067 0.933 15 C 0.020 3.980 16 N -0.904 5.904 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.275 1.275 21 O -0.377 6.377 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 6.689 -6.144 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.083 0.917 5 O -0.310 6.310 6 C -0.073 4.073 7 C -0.010 4.010 8 H 0.059 0.941 9 C -0.167 4.167 10 C -0.178 4.178 11 C 0.141 3.859 12 H 0.009 0.991 13 C -0.588 4.588 14 H 0.085 0.915 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.200 1.200 21 O -0.298 6.298 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.770 6.319 -6.180 12.451 hybrid contribution 0.516 -0.276 0.923 1.092 sum -8.255 6.043 -5.257 11.502 Atomic orbital electron populations 1.21695 0.93565 1.02509 1.01956 1.21769 0.97760 0.95764 1.01666 1.21806 0.91940 0.93930 0.86855 0.91652 1.87821 1.65031 1.48508 1.29621 1.23091 0.92160 0.88400 1.03696 1.23139 0.95214 0.94065 0.88573 0.94107 1.22788 0.97793 0.96435 0.99677 1.22942 0.98373 0.98110 0.98419 1.20443 0.81029 0.89166 0.95261 0.99122 1.21498 1.48525 0.93165 0.95642 0.91461 1.26022 0.93678 0.95297 1.03193 1.70185 1.47743 0.98108 1.38068 0.85409 0.77858 0.78691 0.79067 1.18453 1.20542 1.20012 1.89371 1.33014 1.72998 1.34374 0.91765 0.92741 0.91472 0.92150 0.92783 0.93049 0.93823 0.87614 0.90769 0.89922 0.91745 0.91109 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.79 71.98 0.70 -3.01 16 2 C -0.13 -4.59 5.59 30.59 0.17 -4.42 16 3 C 0.11 3.98 1.92 30.59 0.06 4.04 16 4 H 0.07 2.29 7.61 -2.39 -0.02 2.27 16 5 O -0.39 -11.86 9.49 -148.98 -1.41 -13.27 16 6 C 0.02 0.49 10.45 113.37 1.18 1.67 16 7 C 0.05 2.08 3.03 31.10 0.09 2.17 16 8 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 9 C -0.13 -4.76 6.33 31.61 0.20 -4.56 16 10 C -0.14 -5.99 6.62 31.61 0.21 -5.79 16 11 C 0.20 10.68 3.06 30.35 0.09 10.78 16 12 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 13 C -0.55 -31.90 8.77 25.60 0.22 -31.68 16 14 H 0.07 3.73 7.57 -2.91 -0.02 3.71 16 15 C 0.02 1.16 5.44 84.65 0.46 1.62 16 16 N -0.90 -55.53 13.07 21.45 0.28 -55.25 16 17 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 O -0.38 -20.40 10.24 -148.98 -1.53 -21.92 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.07 1.59 6.98 -2.39 -0.02 1.57 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 2.23 7.73 -2.39 -0.02 2.22 16 27 H 0.05 1.00 7.61 -2.39 -0.02 0.98 16 28 H 0.04 0.91 7.89 -2.38 -0.02 0.90 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.46 7.62 -2.39 -0.02 2.44 16 31 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.06 2.70 7.70 -2.39 -0.02 2.68 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -66.68 278.79 3.81 -62.87 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.05 Total: 10.25 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.40 Total: -29.18 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -2.94 Total: -35.20 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.68 3.81 -62.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386510174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.672 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds