Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47307 * 2 1 4 4 C 1.52994 * 109.87308 * 183.00256 * 3 2 1 5 5 O 1.42900 * 109.46852 * 57.20121 * 4 3 2 6 6 C 1.42909 * 114.00026 * 180.02562 * 5 4 3 7 7 C 1.54104 * 109.87585 * 61.99236 * 3 2 1 8 8 C 1.54809 * 104.30663 * 238.47941 * 7 3 2 9 9 C 1.55226 * 101.98618 * 339.26460 * 8 7 3 10 10 H 1.08998 * 110.52015 * 278.37937 * 9 8 7 11 11 C 1.50702 * 110.77338 * 155.50186 * 9 8 7 12 12 H 1.07999 * 120.00556 * 4.28474 * 11 9 8 13 13 C 1.37882 * 119.99724 * 184.29282 * 11 9 8 14 14 N 1.31516 * 119.99797 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00043 * 359.97438 * 13 11 9 16 16 H 1.48498 * 109.47433 * 90.00055 * 15 13 11 17 17 H 1.48500 * 109.47262 * 210.00536 * 15 13 11 18 18 H 1.48505 * 109.46853 * 330.00037 * 15 13 11 19 19 O 1.43743 * 109.87886 * 304.16981 * 3 2 1 20 20 H 1.08994 * 109.47090 * 182.81521 * 1 2 3 21 21 H 1.08996 * 109.47385 * 302.82169 * 1 2 3 22 22 H 1.09006 * 109.47120 * 62.81894 * 1 2 3 23 23 H 1.08998 * 109.47133 * 240.00227 * 2 1 3 24 24 H 1.09001 * 109.47108 * 119.99815 * 2 1 3 25 25 H 1.08999 * 109.47205 * 177.20418 * 4 3 2 26 26 H 1.09005 * 109.47207 * 297.20140 * 4 3 2 27 27 H 1.09003 * 109.46786 * 60.00068 * 6 5 4 28 28 H 1.08996 * 109.47358 * 179.97438 * 6 5 4 29 29 H 1.09005 * 109.46994 * 300.00474 * 6 5 4 30 30 H 1.09001 * 110.48668 * 357.22897 * 7 3 2 31 31 H 1.09005 * 110.48336 * 119.73578 * 7 3 2 32 32 H 1.09003 * 110.90382 * 97.38844 * 8 7 3 33 33 H 1.09000 * 110.90462 * 220.98999 * 8 7 3 34 34 H 0.96998 * 119.99828 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5681 1.4539 -0.0754 5 8 3.9926 0.7475 -1.2428 6 6 5.4112 0.6981 -1.4085 7 6 1.5731 2.1634 1.2795 8 6 0.7567 3.3723 0.7613 9 6 1.2864 3.5205 -0.6903 10 1 2.2286 4.0684 -0.6991 11 6 0.2675 4.2064 -1.5636 12 1 -0.6495 4.5799 -1.1324 13 6 0.5061 4.3568 -2.9133 14 7 -0.3833 4.9549 -3.6755 15 14 2.0924 3.7112 -3.6591 16 1 1.8954 2.3079 -4.1032 17 1 2.4692 4.5510 -4.8244 18 1 3.1737 3.7615 -2.6424 19 8 1.4872 2.1564 -1.1184 20 1 -0.3633 -1.0264 0.0505 21 1 -0.3634 0.5570 0.8636 22 1 -0.3634 0.4695 -0.9142 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9218 2.4837 -0.1250 26 1 3.9792 0.9709 0.8112 27 1 5.8601 0.1991 -0.5496 28 1 5.6519 0.1449 -2.3163 29 1 5.8035 1.7121 -1.4856 30 1 0.9432 1.5064 1.8792 31 1 2.4306 2.5029 1.8606 32 1 -0.3107 3.1511 0.7649 33 1 0.9694 4.2657 1.3483 34 1 -0.2153 5.0611 -4.6249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388167547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -99.531649 kcal Electronic energy + Delta-G solvation = -15633.712559 eV Core-core repulsion = 13145.646293 eV Total energy + Delta-G solvation = -2488.066266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.32666 -36.98670 -33.47549 -32.10630 -30.99426 -29.23585 -27.17628 -25.63164 -23.31168 -22.47892 -20.16317 -19.19969 -16.92467 -15.99388 -15.74970 -15.52871 -14.80746 -14.72347 -13.76719 -13.42097 -13.08877 -12.78891 -12.43131 -12.17470 -11.99958 -11.42444 -11.27388 -11.12246 -10.81418 -10.62066 -10.53967 -10.34403 -9.98498 -9.73122 -9.54483 -9.43366 -9.30822 -8.56361 -8.32719 -6.06190 -4.14964 3.47719 3.56503 3.69576 4.03980 4.55981 4.81885 5.16527 5.21345 5.36637 5.43277 5.46904 5.54645 5.60885 5.71708 5.74572 5.78497 5.85991 5.99237 6.11667 6.23159 6.35759 6.44010 6.47955 6.63771 6.70676 6.80481 6.94813 7.20080 7.45496 7.65446 8.28506 8.48141 8.93782 9.57252 11.03919 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.014634 C = 0.011164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.918151 B = 1912.828445 C = 2507.387149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C 0.102 3.898 4 C 0.052 3.948 5 O -0.375 6.375 6 C 0.030 3.970 7 C -0.145 4.145 8 C -0.134 4.134 9 C 0.167 3.833 10 H 0.025 0.975 11 C -0.515 4.515 12 H 0.080 0.920 13 C 0.083 3.917 14 N -0.894 5.894 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.303 1.303 18 H -0.269 1.269 19 O -0.355 6.355 20 H 0.042 0.958 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -8.186 8.659 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C 0.061 3.939 4 C -0.025 4.025 5 O -0.293 6.293 6 C -0.067 4.067 7 C -0.183 4.183 8 C -0.172 4.172 9 C 0.111 3.889 10 H 0.043 0.957 11 C -0.552 4.552 12 H 0.098 0.902 13 C -0.121 4.121 14 N -0.531 5.531 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.231 1.231 18 H -0.194 1.194 19 O -0.275 6.275 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.997 -8.299 8.154 14.118 hybrid contribution 1.187 -0.085 -0.080 1.193 sum 9.184 -8.384 8.074 14.826 Atomic orbital electron populations 1.21708 0.95337 1.00106 1.03257 1.21483 0.96595 0.94749 1.01554 1.21970 0.89542 0.93818 0.88605 1.23155 0.96658 0.95611 0.87124 1.87984 1.20708 1.75761 1.44847 1.22708 0.82581 1.00393 1.01007 1.22960 0.99963 0.98470 0.96915 1.23061 1.00203 0.95807 0.98152 1.21281 0.95560 0.80829 0.91186 0.95716 1.20895 1.05515 1.35729 0.93050 0.90198 1.25047 0.97028 0.92951 0.97090 1.69931 1.35251 1.42039 1.05918 0.86356 0.83607 0.78916 0.77738 1.19715 1.23055 1.19361 1.89144 1.81981 1.23470 1.32898 0.93904 0.93036 0.91051 0.91064 0.92474 0.93343 0.93600 0.94660 0.89990 0.94452 0.90800 0.91997 0.90967 0.91874 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.49 37.16 0.35 -2.11 16 2 C -0.11 -1.80 4.99 -26.73 -0.13 -1.93 16 3 C 0.10 1.93 0.65 -90.04 -0.06 1.87 16 4 C 0.05 0.90 4.83 37.15 0.18 1.08 16 5 O -0.37 -7.02 9.85 -39.76 -0.39 -7.41 16 6 C 0.03 0.42 11.01 101.05 1.11 1.53 16 7 C -0.15 -2.42 5.74 -25.20 -0.14 -2.56 16 8 C -0.13 -2.67 6.58 -24.60 -0.16 -2.83 16 9 C 0.17 4.10 2.47 -26.70 -0.07 4.03 16 10 H 0.03 0.63 7.30 -51.93 -0.38 0.25 16 11 C -0.52 -14.94 9.42 -34.44 -0.32 -15.26 16 12 H 0.08 2.45 8.03 -52.49 -0.42 2.03 16 13 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 14 N -0.89 -27.95 13.96 55.43 0.77 -27.18 16 15 Si 0.90 24.26 26.33 -169.99 -4.48 19.78 16 16 H -0.27 -7.48 7.11 56.52 0.40 -7.08 16 17 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 18 H -0.27 -7.03 6.59 56.52 0.37 -6.66 16 19 O -0.35 -8.63 7.67 -39.76 -0.30 -8.93 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.81 6.46 -51.93 -0.34 0.48 16 22 H 0.07 1.42 7.69 -51.93 -0.40 1.02 16 23 H 0.07 1.30 7.54 -51.93 -0.39 0.90 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.09 6.39 -51.93 -0.33 0.76 16 31 H 0.06 0.90 7.70 -51.93 -0.40 0.50 16 32 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -32.35 271.82 -5.26 -37.62 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -5.62 Total: -4.19 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 0.66 Total: -13.78 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.70 Total: -16.34 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.48 Total: 19.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.35 -5.26 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.913 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds