Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47307 * 2 1 4 4 C 1.52994 * 109.87308 * 183.00256 * 3 2 1 5 5 O 1.42900 * 109.46852 * 57.20121 * 4 3 2 6 6 C 1.42909 * 114.00026 * 180.02562 * 5 4 3 7 7 C 1.54104 * 109.87585 * 61.99236 * 3 2 1 8 8 C 1.54809 * 104.30663 * 238.47941 * 7 3 2 9 9 C 1.55226 * 101.98618 * 339.26460 * 8 7 3 10 10 H 1.08998 * 110.52015 * 278.37937 * 9 8 7 11 11 C 1.50702 * 110.77338 * 155.50186 * 9 8 7 12 12 H 1.07999 * 120.00556 * 4.28474 * 11 9 8 13 13 C 1.37882 * 119.99724 * 184.29282 * 11 9 8 14 14 N 1.31516 * 119.99797 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00043 * 359.97438 * 13 11 9 16 16 H 1.48498 * 109.47433 * 90.00055 * 15 13 11 17 17 H 1.48500 * 109.47262 * 210.00536 * 15 13 11 18 18 H 1.48505 * 109.46853 * 330.00037 * 15 13 11 19 19 O 1.43743 * 109.87886 * 304.16981 * 3 2 1 20 20 H 1.08994 * 109.47090 * 182.81521 * 1 2 3 21 21 H 1.08996 * 109.47385 * 302.82169 * 1 2 3 22 22 H 1.09006 * 109.47120 * 62.81894 * 1 2 3 23 23 H 1.08998 * 109.47133 * 240.00227 * 2 1 3 24 24 H 1.09001 * 109.47108 * 119.99815 * 2 1 3 25 25 H 1.08999 * 109.47205 * 177.20418 * 4 3 2 26 26 H 1.09005 * 109.47207 * 297.20140 * 4 3 2 27 27 H 1.09003 * 109.46786 * 60.00068 * 6 5 4 28 28 H 1.08996 * 109.47358 * 179.97438 * 6 5 4 29 29 H 1.09005 * 109.46994 * 300.00474 * 6 5 4 30 30 H 1.09001 * 110.48668 * 357.22897 * 7 3 2 31 31 H 1.09005 * 110.48336 * 119.73578 * 7 3 2 32 32 H 1.09003 * 110.90382 * 97.38844 * 8 7 3 33 33 H 1.09000 * 110.90462 * 220.98999 * 8 7 3 34 34 H 0.96998 * 119.99828 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5681 1.4539 -0.0754 5 8 3.9926 0.7475 -1.2428 6 6 5.4112 0.6981 -1.4085 7 6 1.5731 2.1634 1.2795 8 6 0.7567 3.3723 0.7613 9 6 1.2864 3.5205 -0.6903 10 1 2.2286 4.0684 -0.6991 11 6 0.2675 4.2064 -1.5636 12 1 -0.6495 4.5799 -1.1324 13 6 0.5061 4.3568 -2.9133 14 7 -0.3833 4.9549 -3.6755 15 14 2.0924 3.7112 -3.6591 16 1 1.8954 2.3079 -4.1032 17 1 2.4692 4.5510 -4.8244 18 1 3.1737 3.7615 -2.6424 19 8 1.4872 2.1564 -1.1184 20 1 -0.3633 -1.0264 0.0505 21 1 -0.3634 0.5570 0.8636 22 1 -0.3634 0.4695 -0.9142 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9218 2.4837 -0.1250 26 1 3.9792 0.9709 0.8112 27 1 5.8601 0.1991 -0.5496 28 1 5.6519 0.1449 -2.3163 29 1 5.8035 1.7121 -1.4856 30 1 0.9432 1.5064 1.8792 31 1 2.4306 2.5029 1.8606 32 1 -0.3107 3.1511 0.7649 33 1 0.9694 4.2657 1.3483 34 1 -0.2153 5.0611 -4.6249 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388167547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -121.966973 kcal Electronic energy + Delta-G solvation = -15634.685428 eV Core-core repulsion = 13145.646293 eV Total energy + Delta-G solvation = -2489.039135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86059 -38.33274 -35.26014 -34.08052 -32.61144 -30.68555 -28.83894 -26.98048 -24.84601 -23.97207 -21.95559 -20.65097 -19.08241 -17.32701 -17.22550 -16.91934 -16.60116 -16.19287 -15.48086 -14.92820 -14.76148 -14.36939 -14.16493 -13.79694 -13.33213 -12.92186 -12.84728 -12.62197 -12.40589 -12.21248 -12.13602 -11.99287 -11.72209 -11.36588 -11.26164 -11.22599 -10.86458 -10.58770 -10.10597 -8.38025 -6.48581 1.30221 1.40718 1.51805 2.34587 2.76641 2.94603 3.55632 3.79489 3.92750 4.08257 4.21226 4.34023 4.35373 4.47260 4.48781 4.51779 4.62583 4.67796 4.78421 4.80080 4.93307 5.04307 5.07927 5.13941 5.29287 5.42409 5.46794 5.54020 5.60138 6.19808 6.25190 6.48984 6.72929 7.26884 8.76229 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.014634 C = 0.011164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.918151 B = 1912.828445 C = 2507.387149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C 0.083 3.917 4 C 0.051 3.949 5 O -0.410 6.410 6 C 0.023 3.977 7 C -0.132 4.132 8 C -0.131 4.131 9 C 0.165 3.835 10 H 0.020 0.980 11 C -0.521 4.521 12 H 0.048 0.952 13 C 0.032 3.968 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.259 1.259 19 O -0.387 6.387 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.027 0.973 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 -9.775 10.782 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C 0.043 3.957 4 C -0.026 4.026 5 O -0.329 6.329 6 C -0.073 4.073 7 C -0.169 4.169 8 C -0.169 4.169 9 C 0.109 3.891 10 H 0.038 0.962 11 C -0.558 4.558 12 H 0.066 0.934 13 C -0.168 4.168 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.212 1.212 17 H -0.221 1.221 18 H -0.184 1.184 19 O -0.307 6.307 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.985 -9.887 10.294 17.419 hybrid contribution 0.546 0.363 -0.693 0.953 sum 10.530 -9.524 9.602 17.140 Atomic orbital electron populations 1.21665 0.95637 1.01375 1.01393 1.21499 0.96255 0.93616 1.02568 1.22448 0.90858 0.94494 0.87907 1.23180 0.95439 0.95471 0.88463 1.87936 1.23367 1.75933 1.45703 1.22932 0.80517 1.00929 1.02924 1.22935 1.00843 0.96892 0.96212 1.22967 0.99891 0.98460 0.95566 1.21081 0.94038 0.81036 0.92978 0.96250 1.21237 1.05292 1.35612 0.93648 0.93390 1.25792 0.99752 0.93472 0.97809 1.70035 1.37149 1.44152 1.06386 0.85413 0.80655 0.77361 0.77307 1.21184 1.22074 1.18354 1.89035 1.82940 1.23050 1.35706 0.91399 0.92048 0.95407 0.92870 0.88500 0.94579 0.89545 0.91750 0.88975 0.94593 0.88232 0.88933 0.92286 0.90105 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.49 71.98 0.68 -3.85 16 2 C -0.10 -3.14 4.99 30.60 0.15 -2.99 16 3 C 0.08 2.92 0.65 -10.42 -0.01 2.91 16 4 C 0.05 1.62 4.83 71.98 0.35 1.96 16 5 O -0.41 -14.35 9.85 -144.65 -1.43 -15.78 16 6 C 0.02 0.58 11.01 113.37 1.25 1.82 16 7 C -0.13 -3.85 5.74 31.59 0.18 -3.67 16 8 C -0.13 -4.99 6.58 31.98 0.21 -4.78 16 9 C 0.16 8.04 2.47 30.61 0.08 8.11 16 10 H 0.02 0.98 7.30 -2.39 -0.02 0.96 16 11 C -0.52 -31.07 9.42 25.60 0.24 -30.83 16 12 H 0.05 3.08 8.03 -2.91 -0.02 3.05 16 13 C 0.03 1.94 5.47 84.66 0.46 2.41 16 14 N -0.94 -60.54 13.96 21.45 0.30 -60.24 16 15 Si 0.96 51.28 26.33 68.60 1.81 53.08 16 16 H -0.29 -15.67 7.11 99.48 0.71 -14.97 16 17 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 18 H -0.26 -13.19 6.59 99.48 0.66 -12.53 16 19 O -0.39 -18.58 7.67 -144.65 -1.11 -19.68 16 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.06 1.78 6.46 -2.39 -0.02 1.77 16 22 H 0.03 1.09 7.69 -2.38 -0.02 1.07 16 23 H 0.05 1.83 7.54 -2.39 -0.02 1.81 16 24 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.10 2.43 6.39 -2.39 -0.02 2.41 16 31 H 0.09 2.18 7.70 -2.38 -0.02 2.16 16 32 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -72.40 271.82 4.17 -68.24 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.00 Total: 3.28 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.60 Total: -28.90 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.30 Total: -60.24 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -2.53 Total: -35.46 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.81 Total: 53.08 kcal Total: -72.40 4.17 -68.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.731 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds