Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47648 * 2 1 4 4 C 1.52998 * 109.87126 * 178.55963 * 3 2 1 5 5 O 1.42901 * 109.47215 * 301.41238 * 4 3 2 6 6 C 1.42895 * 114.00352 * 180.02562 * 5 4 3 7 7 C 1.54102 * 109.87747 * 299.56777 * 3 2 1 8 8 C 1.54811 * 104.19061 * 121.60516 * 7 3 2 9 9 C 1.54998 * 102.09139 * 20.87528 * 8 7 3 10 10 H 1.09001 * 110.61710 * 81.47989 * 9 8 7 11 11 C 1.50700 * 110.61887 * 204.32228 * 9 8 7 12 12 H 1.08002 * 119.99871 * 359.97438 * 11 9 8 13 13 C 1.37874 * 120.00060 * 180.02562 * 11 9 8 14 14 N 1.31523 * 120.00184 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00312 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47106 * 89.99553 * 15 13 11 17 17 H 1.48497 * 109.47340 * 209.99994 * 15 13 11 18 18 H 1.48504 * 109.47065 * 329.99642 * 15 13 11 19 19 O 1.43748 * 109.87619 * 57.55009 * 3 2 1 20 20 H 1.08998 * 109.46998 * 305.88893 * 1 2 3 21 21 H 1.09005 * 109.46478 * 65.88630 * 1 2 3 22 22 H 1.08993 * 109.47614 * 185.88519 * 1 2 3 23 23 H 1.09003 * 109.47005 * 239.99866 * 2 1 3 24 24 H 1.09000 * 109.47124 * 120.00617 * 2 1 3 25 25 H 1.09004 * 109.47146 * 181.41553 * 4 3 2 26 26 H 1.08997 * 109.47374 * 61.41600 * 4 3 2 27 27 H 1.09005 * 109.47465 * 59.99962 * 6 5 4 28 28 H 1.08992 * 109.47571 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46980 * 299.99883 * 6 5 4 30 30 H 1.09004 * 110.48440 * 240.27500 * 7 3 2 31 31 H 1.08994 * 110.49068 * 2.78903 * 7 3 2 32 32 H 1.08996 * 110.91070 * 139.07293 * 8 7 3 33 33 H 1.09003 * 110.90432 * 262.68492 * 8 7 3 34 34 H 0.96989 * 119.99984 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5696 1.4531 0.0362 5 8 4.0233 0.7639 1.2029 6 6 5.4455 0.7163 1.3337 7 6 1.5406 2.1748 -1.2605 8 6 0.7405 3.3792 -0.7075 9 6 1.3101 3.5162 0.7274 10 1 2.2536 4.0619 0.7154 11 6 0.3154 4.1991 1.6303 12 1 -0.6404 4.5154 1.2394 13 6 0.6259 4.4211 2.9552 14 7 1.7901 4.0365 3.4312 15 14 -0.6067 5.2683 4.0742 16 1 -1.4820 4.2495 4.7076 17 1 0.1182 6.0223 5.1282 18 1 -1.4364 6.2065 3.2763 19 8 1.5192 2.1450 1.1408 20 1 -0.3633 0.6024 0.8326 21 1 -0.3632 0.4199 -0.9381 22 1 -0.3634 -1.0221 0.1054 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9253 2.4831 0.0614 26 1 3.9576 0.9564 -0.8531 27 1 5.8398 1.7312 1.3860 28 1 5.7089 0.1774 2.2437 29 1 5.8727 0.2045 0.4713 30 1 2.3829 2.5195 -1.8603 31 1 0.8951 1.5234 -1.8496 32 1 0.9373 4.2782 -1.2916 33 1 -0.3268 3.1588 -0.6829 34 1 2.0084 4.1923 4.3632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388167548.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = -123.815267 kcal Electronic energy + Delta-G solvation = -15486.061474 eV Core-core repulsion = 12996.942191 eV Total energy + Delta-G solvation = -2489.119283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63666 -38.21266 -35.19526 -33.81416 -32.43307 -30.49508 -28.51504 -26.91287 -24.93998 -23.98032 -21.99883 -20.44475 -18.69094 -17.22197 -17.09687 -16.77853 -16.52024 -16.05333 -15.58302 -14.95077 -14.31293 -14.16983 -14.04692 -13.59802 -13.27679 -12.86611 -12.70296 -12.52848 -12.37494 -12.29759 -12.09177 -11.95063 -11.85169 -11.29663 -11.15132 -10.95144 -10.70348 -10.51063 -9.82861 -8.13754 -6.34285 1.39342 1.41710 1.51736 2.40945 2.89175 3.11355 3.74221 3.87988 3.99055 4.17333 4.27808 4.37708 4.41745 4.51750 4.54105 4.56671 4.74233 4.76632 4.81223 4.87483 4.97666 5.08227 5.13782 5.18830 5.38319 5.47967 5.55807 5.64548 5.76809 6.20298 6.34935 6.65767 7.04484 7.41021 8.94204 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.011049 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.489478 B = 2533.470982 C = 2992.798805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C 0.080 3.920 4 C 0.058 3.942 5 O -0.406 6.406 6 C 0.027 3.973 7 C -0.133 4.133 8 C -0.138 4.138 9 C 0.200 3.800 10 H -0.014 1.014 11 C -0.550 4.550 12 H 0.065 0.935 13 C 0.020 3.980 14 N -0.902 5.902 15 Si 0.961 3.039 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.259 1.259 19 O -0.370 6.370 20 H 0.030 0.970 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.024 0.976 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -6.311 -9.200 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C 0.039 3.961 4 C -0.019 4.019 5 O -0.325 6.325 6 C -0.069 4.069 7 C -0.171 4.171 8 C -0.176 4.176 9 C 0.145 3.855 10 H 0.004 0.996 11 C -0.587 4.587 12 H 0.083 0.917 13 C -0.181 4.181 14 N -0.539 5.539 15 Si 0.785 3.215 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.183 1.183 19 O -0.289 6.289 20 H 0.049 0.951 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.509 -6.482 -8.716 11.148 hybrid contribution 0.068 0.840 0.730 1.116 sum 2.577 -5.641 -7.986 10.112 Atomic orbital electron populations 1.21654 0.95306 1.01255 1.01618 1.21463 0.96576 0.93794 1.02012 1.22370 0.90720 0.94691 0.88331 1.23095 0.95948 0.94888 0.87920 1.87950 1.22628 1.76582 1.45342 1.22866 0.80665 1.00579 1.02774 1.22926 1.00504 0.97153 0.96472 1.23059 0.99924 0.97939 0.96661 1.20554 0.92922 0.80978 0.91092 0.99588 1.21427 1.02958 1.38296 0.96024 0.91654 1.25988 0.96909 0.95297 0.99950 1.70206 1.22932 1.45990 1.14778 0.85537 0.78959 0.78574 0.78428 1.20296 1.20642 1.18290 1.89321 1.83673 1.22825 1.33116 0.95089 0.91694 0.91604 0.89014 0.93395 0.95728 0.90414 0.95066 0.89062 0.91951 0.90004 0.88307 0.90878 0.91801 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.48 71.98 0.68 -4.00 16 2 C -0.10 -3.49 5.00 30.59 0.15 -3.34 16 3 C 0.08 3.20 0.65 -10.42 -0.01 3.19 16 4 C 0.06 2.21 4.81 71.98 0.35 2.55 16 5 O -0.41 -16.75 9.92 -143.01 -1.42 -18.17 16 6 C 0.03 0.83 11.01 113.37 1.25 2.08 16 7 C -0.13 -4.47 5.83 31.59 0.18 -4.28 16 8 C -0.14 -5.67 6.55 31.90 0.21 -5.46 16 9 C 0.20 10.78 3.03 30.53 0.09 10.88 16 10 H -0.01 -0.80 8.11 -2.39 -0.02 -0.82 16 11 C -0.55 -32.11 8.82 25.60 0.23 -31.88 16 12 H 0.07 3.65 7.77 -2.91 -0.02 3.63 16 13 C 0.02 1.21 5.44 84.65 0.46 1.67 16 14 N -0.90 -56.84 13.13 21.45 0.28 -56.56 16 15 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 O -0.37 -20.03 9.47 -143.01 -1.35 -21.38 16 20 H 0.03 1.27 7.46 -2.39 -0.02 1.25 16 21 H 0.06 1.89 6.63 -2.38 -0.02 1.87 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.86 7.63 -2.39 -0.02 1.84 16 25 H 0.02 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 2.37 7.70 -2.38 -0.02 2.35 16 31 H 0.10 2.73 6.29 -2.39 -0.02 2.72 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 34 H 0.26 15.49 8.31 -92.72 -0.77 14.72 16 Total: -1.00 -71.48 277.00 4.18 -67.30 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.05 Total: 9.90 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.59 Total: -28.60 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -2.77 Total: -39.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.48 4.18 -67.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167548.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.514 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds