Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53002 * 109.86906 * 180.51240 * 3 2 1 5 5 O 1.42904 * 109.47198 * 58.80019 * 4 3 2 6 6 C 1.42892 * 114.00067 * 179.97438 * 5 4 3 7 7 C 1.54094 * 109.88067 * 59.34983 * 3 2 1 8 8 C 1.54817 * 104.18773 * 242.60613 * 7 3 2 9 9 C 1.54994 * 102.08928 * 20.88166 * 8 7 3 10 10 H 1.09000 * 110.75322 * 81.54382 * 9 8 7 11 11 C 1.50704 * 110.61699 * 204.47424 * 9 8 7 12 12 H 1.08006 * 119.99830 * 355.25254 * 11 9 8 13 13 C 1.37875 * 120.00128 * 175.52421 * 11 9 8 14 14 N 1.31511 * 119.99933 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00012 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47213 * 90.00021 * 15 13 11 17 17 H 1.48499 * 109.47076 * 210.00225 * 15 13 11 18 18 H 1.48502 * 109.47114 * 329.99987 * 15 13 11 19 19 O 1.43748 * 109.87713 * 301.51841 * 3 2 1 20 20 H 1.09001 * 109.47317 * 67.58808 * 1 2 3 21 21 H 1.09001 * 109.46903 * 187.58436 * 1 2 3 22 22 H 1.09001 * 109.47572 * 307.58477 * 1 2 3 23 23 H 1.08994 * 109.47119 * 239.99950 * 2 1 3 24 24 H 1.08999 * 109.47305 * 119.99521 * 2 1 3 25 25 H 1.09002 * 109.46974 * 178.79396 * 4 3 2 26 26 H 1.08996 * 109.46930 * 298.79653 * 4 3 2 27 27 H 1.09000 * 109.47327 * 300.00160 * 6 5 4 28 28 H 1.08999 * 109.47009 * 59.99967 * 6 5 4 29 29 H 1.08999 * 109.47297 * 180.02562 * 6 5 4 30 30 H 1.09001 * 110.49053 * 1.27785 * 7 3 2 31 31 H 1.09000 * 110.49256 * 123.79946 * 7 3 2 32 32 H 1.08997 * 110.90664 * 262.67942 * 8 7 3 33 33 H 1.09003 * 110.90539 * 139.07835 * 8 7 3 34 34 H 0.97001 * 120.00098 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5698 1.4533 -0.0129 5 8 4.0413 0.7621 -1.1714 6 6 5.4653 0.7144 -1.2804 7 6 1.5180 2.1828 1.2467 8 6 0.6380 3.3196 0.6722 9 6 0.3142 2.7929 -0.7491 10 1 -0.5103 2.0806 -0.7185 11 6 -0.0078 3.9353 -1.6778 12 1 -0.0649 4.9433 -1.2943 13 6 -0.2350 3.6929 -3.0159 14 7 -0.1702 2.4648 -3.4819 15 14 -0.6334 5.1089 -4.1671 16 1 0.6256 5.6547 -4.7348 17 1 -1.5027 4.6221 -5.2682 18 1 -1.3399 6.1758 -3.4135 19 8 1.5365 2.1389 -1.1524 20 1 -0.3634 0.3918 -0.9500 21 1 -0.3633 -1.0187 0.1356 22 1 -0.3634 0.6268 0.8144 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 3.9258 2.4833 -0.0344 26 1 3.9441 0.9581 0.8831 27 1 5.8602 1.7292 -1.3283 28 1 5.8793 0.2042 -0.4107 29 1 5.7426 0.1739 -2.1854 30 1 0.9205 1.5135 1.8656 31 1 2.3479 2.5936 1.8217 32 1 1.1947 4.2554 0.6229 33 1 -0.2727 3.4408 1.2590 34 1 -0.3297 2.2943 -4.4234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388167549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = -97.177082 kcal Electronic energy + Delta-G solvation = -15523.785083 eV Core-core repulsion = 13035.820919 eV Total energy + Delta-G solvation = -2487.964164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08713 -36.87209 -33.05723 -31.76146 -30.65275 -29.36292 -26.77093 -25.38254 -23.15924 -22.31960 -20.20924 -18.92622 -16.61045 -16.00456 -15.35589 -15.05219 -14.78777 -14.28376 -14.10972 -13.33772 -13.10401 -12.33328 -11.93978 -11.77781 -11.65735 -11.26871 -11.15596 -10.87522 -10.78603 -10.56059 -10.49219 -10.22567 -10.05514 -9.72510 -9.49140 -9.19163 -8.94485 -8.50867 -7.77296 -5.93116 -4.05125 3.35658 3.41950 3.44051 4.25326 4.48185 5.02770 5.37044 5.44469 5.51676 5.59024 5.60840 5.73737 5.80172 5.89007 5.92816 5.97482 6.07667 6.19109 6.30616 6.52707 6.57469 6.68453 6.76702 6.84074 6.90894 7.07252 7.15949 7.63518 7.66981 7.96891 8.33534 8.69805 9.07999 9.64389 11.14362 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028876 B = 0.010783 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.420981 B = 2596.046604 C = 2948.867930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C 0.097 3.903 4 C 0.076 3.924 5 O -0.371 6.371 6 C 0.031 3.969 7 C -0.146 4.146 8 C -0.148 4.148 9 C 0.199 3.801 10 H 0.041 0.959 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.078 3.922 14 N -0.859 5.859 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.329 6.329 20 H 0.081 0.919 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -3.362 7.611 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C 0.056 3.944 4 C 0.000 4.000 5 O -0.289 6.289 6 C -0.066 4.066 7 C -0.184 4.184 8 C -0.186 4.186 9 C 0.144 3.856 10 H 0.058 0.942 11 C -0.571 4.571 12 H 0.080 0.920 13 C -0.128 4.128 14 N -0.495 5.495 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.248 6.248 20 H 0.100 0.900 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.730 -3.560 7.104 9.797 hybrid contribution 0.108 0.826 -0.224 0.863 sum 5.839 -2.734 6.881 9.429 Atomic orbital electron populations 1.22007 0.95832 0.99805 1.03634 1.21811 0.96414 0.96688 1.01017 1.21949 0.90675 0.92894 0.88911 1.22716 0.94798 0.95525 0.87010 1.88046 1.19594 1.76550 1.44695 1.22673 0.82744 1.00182 1.00961 1.22957 0.99557 0.98468 0.97403 1.23216 0.98107 0.97435 0.99861 1.20954 0.84782 0.91661 0.88215 0.94198 1.21005 1.49244 0.93174 0.93682 0.92029 1.25047 0.94069 0.95378 0.98267 1.70032 1.46337 1.18912 1.14177 0.86665 0.78280 0.82728 0.80687 1.20578 1.21176 1.19860 1.89367 1.40746 1.66064 1.28656 0.89967 0.94350 0.93196 0.91097 0.93487 0.93320 0.93872 0.94540 0.94982 0.90122 0.91310 0.92361 0.91923 0.92364 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 8.20 37.16 0.30 -2.71 16 2 C -0.12 -2.35 4.98 -26.73 -0.13 -2.48 16 3 C 0.10 2.02 0.91 -90.05 -0.08 1.94 16 4 C 0.08 1.42 4.88 37.16 0.18 1.60 16 5 O -0.37 -7.35 9.94 -41.69 -0.41 -7.77 16 6 C 0.03 0.46 11.01 101.05 1.11 1.57 16 7 C -0.15 -2.67 5.66 -25.20 -0.14 -2.81 16 8 C -0.15 -3.14 6.54 -24.72 -0.16 -3.30 16 9 C 0.20 5.17 2.41 -26.83 -0.06 5.10 16 10 H 0.04 1.08 5.10 -51.93 -0.26 0.82 16 11 C -0.53 -15.26 8.83 -34.44 -0.30 -15.56 16 12 H 0.06 1.71 7.78 -52.48 -0.41 1.30 16 13 C 0.08 2.26 5.42 -17.82 -0.10 2.17 16 14 N -0.86 -25.91 12.94 55.43 0.72 -25.19 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 19 O -0.33 -8.77 9.86 -41.69 -0.41 -9.18 16 20 H 0.08 1.91 6.30 -51.93 -0.33 1.58 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.91 5.94 -51.93 -0.31 0.60 16 23 H 0.07 1.49 7.66 -51.93 -0.40 1.10 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.13 6.42 -51.93 -0.33 0.80 16 31 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 32 H 0.06 1.33 8.05 -51.93 -0.42 0.92 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 270.83 15.07 4.08 4.08 Total: -1.00 -31.65 270.83 -5.81 -37.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.38 Total: -1.68 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 0.61 Total: -14.49 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.72 Total: -25.19 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.83 Total: -16.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.65 -5.81 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.723 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds