Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53002 * 109.86906 * 180.51240 * 3 2 1 5 5 O 1.42904 * 109.47198 * 58.80019 * 4 3 2 6 6 C 1.42892 * 114.00067 * 179.97438 * 5 4 3 7 7 C 1.54094 * 109.88067 * 59.34983 * 3 2 1 8 8 C 1.54817 * 104.18773 * 242.60613 * 7 3 2 9 9 C 1.54994 * 102.08928 * 20.88166 * 8 7 3 10 10 H 1.09000 * 110.75322 * 81.54382 * 9 8 7 11 11 C 1.50704 * 110.61699 * 204.47424 * 9 8 7 12 12 H 1.08006 * 119.99830 * 355.25254 * 11 9 8 13 13 C 1.37875 * 120.00128 * 175.52421 * 11 9 8 14 14 N 1.31511 * 119.99933 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00012 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47213 * 90.00021 * 15 13 11 17 17 H 1.48499 * 109.47076 * 210.00225 * 15 13 11 18 18 H 1.48502 * 109.47114 * 329.99987 * 15 13 11 19 19 O 1.43748 * 109.87713 * 301.51841 * 3 2 1 20 20 H 1.09001 * 109.47317 * 67.58808 * 1 2 3 21 21 H 1.09001 * 109.46903 * 187.58436 * 1 2 3 22 22 H 1.09001 * 109.47572 * 307.58477 * 1 2 3 23 23 H 1.08994 * 109.47119 * 239.99950 * 2 1 3 24 24 H 1.08999 * 109.47305 * 119.99521 * 2 1 3 25 25 H 1.09002 * 109.46974 * 178.79396 * 4 3 2 26 26 H 1.08996 * 109.46930 * 298.79653 * 4 3 2 27 27 H 1.09000 * 109.47327 * 300.00160 * 6 5 4 28 28 H 1.08999 * 109.47009 * 59.99967 * 6 5 4 29 29 H 1.08999 * 109.47297 * 180.02562 * 6 5 4 30 30 H 1.09001 * 110.49053 * 1.27785 * 7 3 2 31 31 H 1.09000 * 110.49256 * 123.79946 * 7 3 2 32 32 H 1.08997 * 110.90664 * 262.67942 * 8 7 3 33 33 H 1.09003 * 110.90539 * 139.07835 * 8 7 3 34 34 H 0.97001 * 120.00098 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5698 1.4533 -0.0129 5 8 4.0413 0.7621 -1.1714 6 6 5.4653 0.7144 -1.2804 7 6 1.5180 2.1828 1.2467 8 6 0.6380 3.3196 0.6722 9 6 0.3142 2.7929 -0.7491 10 1 -0.5103 2.0806 -0.7185 11 6 -0.0078 3.9353 -1.6778 12 1 -0.0649 4.9433 -1.2943 13 6 -0.2350 3.6929 -3.0159 14 7 -0.1702 2.4648 -3.4819 15 14 -0.6334 5.1089 -4.1671 16 1 0.6256 5.6547 -4.7348 17 1 -1.5027 4.6221 -5.2682 18 1 -1.3399 6.1758 -3.4135 19 8 1.5365 2.1389 -1.1524 20 1 -0.3634 0.3918 -0.9500 21 1 -0.3633 -1.0187 0.1356 22 1 -0.3634 0.6268 0.8144 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 3.9258 2.4833 -0.0344 26 1 3.9441 0.9581 0.8831 27 1 5.8602 1.7292 -1.3283 28 1 5.8793 0.2042 -0.4107 29 1 5.7426 0.1739 -2.1854 30 1 0.9205 1.5135 1.8656 31 1 2.3479 2.5936 1.8217 32 1 1.1947 4.2554 0.6229 33 1 -0.2727 3.4408 1.2590 34 1 -0.3297 2.2943 -4.4234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388167549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = -118.558040 kcal Electronic energy + Delta-G solvation = -15524.712231 eV Core-core repulsion = 13035.820919 eV Total energy + Delta-G solvation = -2488.891312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72941 -38.31203 -35.00701 -33.63172 -32.35698 -30.93641 -28.42195 -26.91624 -24.78192 -23.94327 -22.03554 -20.50858 -18.65902 -17.50130 -16.78269 -16.67428 -16.49623 -16.06336 -15.64862 -14.97792 -14.78855 -13.91996 -13.57041 -13.52908 -13.17678 -12.86007 -12.74861 -12.63045 -12.41385 -12.22409 -12.20182 -11.93618 -11.80775 -11.28997 -11.15961 -10.89659 -10.67029 -10.49767 -9.64834 -8.10287 -6.29648 1.39566 1.41428 1.51451 2.42416 2.95492 3.12104 3.65362 3.89861 4.05761 4.18475 4.30057 4.40480 4.43588 4.52998 4.54923 4.58284 4.71800 4.82225 4.85427 4.91916 4.99925 5.06592 5.10855 5.23500 5.35471 5.50069 5.53614 5.67793 5.86543 6.25814 6.36814 6.67768 7.11674 7.44805 8.97126 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028876 B = 0.010783 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.420981 B = 2596.046604 C = 2948.867930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.078 3.922 4 C 0.077 3.923 5 O -0.411 6.411 6 C 0.025 3.975 7 C -0.133 4.133 8 C -0.143 4.143 9 C 0.191 3.809 10 H 0.020 0.980 11 C -0.557 4.557 12 H 0.061 0.939 13 C 0.023 3.977 14 N -0.897 5.897 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.261 1.261 19 O -0.372 6.372 20 H 0.031 0.969 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -3.267 9.387 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.037 3.963 4 C 0.001 3.999 5 O -0.331 6.331 6 C -0.071 4.071 7 C -0.171 4.171 8 C -0.181 4.181 9 C 0.135 3.865 10 H 0.037 0.963 11 C -0.594 4.594 12 H 0.079 0.921 13 C -0.179 4.179 14 N -0.534 5.534 15 Si 0.781 3.219 16 H -0.205 1.205 17 H -0.206 1.206 18 H -0.185 1.185 19 O -0.292 6.292 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.576 -3.457 8.899 11.593 hybrid contribution -0.107 0.745 -0.751 1.063 sum 6.470 -2.711 8.148 10.752 Atomic orbital electron populations 1.21884 0.96167 1.01167 1.01238 1.21769 0.96010 0.96115 1.01531 1.22393 0.92380 0.93244 0.88239 1.22753 0.93228 0.95689 0.88266 1.87992 1.22588 1.76807 1.45696 1.22895 0.80330 1.01029 1.02811 1.22914 1.00190 0.97370 0.96580 1.23099 0.99471 0.98127 0.97412 1.20851 0.84514 0.90699 0.90419 0.96273 1.21499 1.49072 0.94133 0.94727 0.92056 1.25908 0.94014 0.97904 1.00072 1.70191 1.47832 1.21083 1.14301 0.85604 0.78062 0.79672 0.78540 1.20503 1.20609 1.18486 1.89266 1.40709 1.67118 1.32065 0.94983 0.91864 0.92074 0.93792 0.89526 0.94037 0.89847 0.94161 0.92080 0.89273 0.88976 0.89342 0.92544 0.90708 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 8.20 71.98 0.59 -5.04 16 2 C -0.12 -4.34 4.98 30.59 0.15 -4.19 16 3 C 0.08 3.14 0.91 -10.42 -0.01 3.13 16 4 C 0.08 2.70 4.88 71.98 0.35 3.05 16 5 O -0.41 -15.98 9.94 -142.81 -1.42 -17.40 16 6 C 0.03 0.69 11.01 113.37 1.25 1.94 16 7 C -0.13 -4.46 5.66 31.58 0.18 -4.28 16 8 C -0.14 -5.89 6.54 31.90 0.21 -5.68 16 9 C 0.19 10.08 2.41 30.53 0.07 10.15 16 10 H 0.02 1.10 5.10 -2.39 -0.01 1.09 16 11 C -0.56 -32.54 8.83 25.60 0.23 -32.31 16 12 H 0.06 3.45 7.78 -2.91 -0.02 3.43 16 13 C 0.02 1.36 5.42 84.65 0.46 1.82 16 14 N -0.90 -56.14 12.94 21.45 0.28 -55.86 16 15 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 O -0.37 -20.21 9.86 -142.81 -1.41 -21.61 16 20 H 0.03 1.53 6.30 -2.39 -0.02 1.52 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 2.14 5.94 -2.39 -0.01 2.13 16 23 H 0.04 1.85 7.66 -2.39 -0.02 1.83 16 24 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 2.65 6.42 -2.39 -0.02 2.63 16 31 H 0.09 2.44 7.70 -2.39 -0.02 2.42 16 32 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -71.10 270.83 4.01 -67.08 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.06 Total: 11.58 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.48 Total: -31.40 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.83 Total: -39.01 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.10 4.01 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.476 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds