Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 C 1.53001 * 109.82333 * 178.67175 * 3 2 1 5 5 O 1.42892 * 109.47328 * 300.83743 * 4 3 2 6 6 C 1.42896 * 114.00497 * 180.02562 * 5 4 3 7 7 C 1.54377 * 109.90805 * 299.61054 * 3 2 1 8 8 C 1.55417 * 102.31510 * 140.84065 * 7 3 2 9 9 C 1.54951 * 100.88830 * 325.99223 * 8 7 3 10 10 H 1.08997 * 110.30662 * 277.35185 * 9 8 7 11 11 C 1.50701 * 110.30752 * 155.28658 * 9 8 7 12 12 H 1.07999 * 120.00227 * 1.39066 * 11 9 8 13 13 C 1.37877 * 119.99938 * 181.38346 * 11 9 8 14 14 N 1.31518 * 119.99797 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00031 * 180.27361 * 13 11 9 16 16 H 1.48495 * 109.47393 * 269.73108 * 15 13 11 17 17 H 1.48503 * 109.47102 * 29.73164 * 15 13 11 18 18 H 1.48507 * 109.46990 * 149.72862 * 15 13 11 19 19 O 1.43243 * 109.83053 * 57.78538 * 3 2 1 20 20 H 1.09001 * 109.47207 * 186.24051 * 1 2 3 21 21 H 1.09000 * 109.47436 * 306.24163 * 1 2 3 22 22 H 1.08997 * 109.47374 * 66.24336 * 1 2 3 23 23 H 1.09000 * 109.47130 * 239.99951 * 2 1 3 24 24 H 1.09003 * 109.46950 * 120.00286 * 2 1 3 25 25 H 1.08999 * 109.46731 * 60.84116 * 4 3 2 26 26 H 1.09000 * 109.46973 * 180.83665 * 4 3 2 27 27 H 1.09007 * 109.46871 * 300.00298 * 6 5 4 28 28 H 1.08999 * 109.46893 * 59.99603 * 6 5 4 29 29 H 1.08998 * 109.47603 * 180.02562 * 6 5 4 30 30 H 1.09003 * 110.84553 * 259.10321 * 7 3 2 31 31 H 1.09004 * 110.84833 * 22.51436 * 7 3 2 32 32 H 1.08998 * 111.21230 * 208.06037 * 8 7 3 33 33 H 1.09004 * 111.08636 * 83.86340 * 8 7 3 34 34 H 0.96997 * 119.99734 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5696 1.4520 0.0334 5 8 4.0247 0.7734 1.2056 6 6 5.4471 0.7256 1.3343 7 6 1.5390 2.1771 -1.2620 8 6 1.2012 3.5904 -0.7106 9 6 0.7021 3.2375 0.7132 10 1 -0.3450 2.9363 0.6832 11 6 0.8805 4.4150 1.6367 12 1 1.2857 5.3417 1.2582 13 6 0.5262 4.3092 2.9650 14 7 0.0331 3.1805 3.4261 15 14 0.7401 5.7711 4.1080 16 1 2.0891 5.7224 4.7268 17 1 0.5958 7.0301 3.3338 18 1 -0.2947 5.7230 5.1721 19 8 1.5247 2.1400 1.1401 20 1 -0.3634 -1.0216 0.1117 21 1 -0.3634 0.6075 0.8288 22 1 -0.3634 0.4140 -0.9405 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.9554 0.9466 -0.8520 26 1 3.9262 2.4819 0.0482 27 1 5.8723 0.2054 0.4759 28 1 5.8423 1.7406 1.3763 29 1 5.7116 0.1941 2.2484 30 1 2.3240 2.2317 -2.0163 31 1 0.6492 1.6934 -1.6649 32 1 0.4139 4.0646 -1.2966 33 1 2.0911 4.2187 -0.6705 34 1 -0.2158 3.1060 4.3607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388167551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -101.400259 kcal Electronic energy + Delta-G solvation = -15495.470575 eV Core-core repulsion = 13007.323280 eV Total energy + Delta-G solvation = -2488.147295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.99698 -36.77074 -33.27127 -31.83874 -30.77185 -29.04385 -26.74758 -25.34144 -23.17217 -22.41760 -20.31126 -18.85929 -16.51111 -16.09591 -15.32426 -15.16716 -14.68684 -14.23295 -13.98291 -13.41327 -13.07346 -12.48173 -12.01444 -11.79498 -11.70265 -11.31302 -11.09989 -10.87510 -10.82285 -10.57518 -10.52099 -10.27992 -10.07012 -9.72026 -9.57641 -9.15145 -8.97047 -8.48434 -7.77170 -5.92802 -4.05475 3.35490 3.41763 3.43778 4.27801 4.48335 5.02083 5.35696 5.44027 5.51128 5.57968 5.62660 5.76053 5.78040 5.89822 5.92208 5.97041 6.07476 6.16875 6.22160 6.47542 6.56201 6.61918 6.74536 6.77865 6.89572 6.98652 7.10676 7.66147 7.70437 7.96243 8.34566 8.75028 9.13660 9.65012 11.14607 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.011188 C = 0.009719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.087724 B = 2502.140753 C = 2880.222851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.103 3.897 4 C 0.067 3.933 5 O -0.370 6.370 6 C 0.032 3.968 7 C -0.149 4.149 8 C -0.148 4.148 9 C 0.209 3.791 10 H 0.028 0.972 11 C -0.535 4.535 12 H 0.060 0.940 13 C 0.079 3.921 14 N -0.860 5.860 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.274 1.274 18 H -0.286 1.286 19 O -0.332 6.332 20 H 0.041 0.959 21 H 0.076 0.924 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -4.377 -7.632 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.062 3.938 4 C -0.010 4.010 5 O -0.288 6.288 6 C -0.065 4.065 7 C -0.187 4.187 8 C -0.186 4.186 9 C 0.154 3.846 10 H 0.046 0.954 11 C -0.573 4.573 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.496 5.496 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.199 1.199 18 H -0.212 1.212 19 O -0.251 6.251 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.113 -4.606 -7.125 9.906 hybrid contribution 0.471 0.904 0.233 1.045 sum 5.584 -3.702 -6.892 9.612 Atomic orbital electron populations 1.21784 0.95867 1.00730 1.02365 1.21666 0.96258 0.96387 1.01111 1.21893 0.90255 0.93030 0.88646 1.22917 0.95854 0.95709 0.86514 1.88019 1.19770 1.77172 1.43883 1.22668 0.82871 1.00166 1.00830 1.23187 1.00868 0.97583 0.97045 1.23357 1.00825 0.94838 0.99582 1.20535 0.90598 0.85210 0.88260 0.95423 1.21094 1.44792 0.96683 0.94724 0.92172 1.25046 0.93931 0.95446 0.98223 1.70031 1.40363 1.24502 1.14675 0.86675 0.77937 0.83076 0.80719 1.20572 1.19867 1.21163 1.88941 1.66452 1.44203 1.25543 0.93977 0.90541 0.93648 0.93206 0.91141 0.94284 0.93299 0.95080 0.94508 0.90195 0.92106 0.90642 0.92004 0.91853 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.45 37.16 0.35 -2.40 16 2 C -0.12 -2.18 5.11 -26.73 -0.14 -2.32 16 3 C 0.10 2.12 0.73 -89.90 -0.07 2.06 16 4 C 0.07 1.27 4.93 37.16 0.18 1.45 16 5 O -0.37 -7.45 9.93 -42.52 -0.42 -7.88 16 6 C 0.03 0.47 11.01 101.05 1.11 1.59 16 7 C -0.15 -2.69 5.89 -24.73 -0.15 -2.84 16 8 C -0.15 -3.10 6.54 -24.42 -0.16 -3.26 16 9 C 0.21 5.45 3.06 -26.85 -0.08 5.37 16 10 H 0.03 0.78 7.91 -51.93 -0.41 0.37 16 11 C -0.54 -15.31 8.80 -34.44 -0.30 -15.62 16 12 H 0.06 1.67 7.76 -52.49 -0.41 1.26 16 13 C 0.08 2.30 5.42 -17.82 -0.10 2.21 16 14 N -0.86 -26.08 12.99 55.43 0.72 -25.36 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 O -0.33 -8.77 9.06 -42.52 -0.39 -9.16 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 1.69 7.07 -51.93 -0.37 1.32 16 22 H 0.04 0.75 6.35 -51.93 -0.33 0.42 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.43 7.64 -51.93 -0.40 1.03 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 31 H 0.08 1.27 5.89 -51.93 -0.31 0.97 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -31.70 275.70 -5.85 -37.55 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.56 Total: -2.38 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 0.66 Total: -13.76 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.72 Total: -25.36 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.81 Total: -17.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.70 -5.85 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.845 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds