Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 C 1.53001 * 109.82333 * 178.67175 * 3 2 1 5 5 O 1.42892 * 109.47328 * 300.83743 * 4 3 2 6 6 C 1.42896 * 114.00497 * 180.02562 * 5 4 3 7 7 C 1.54377 * 109.90805 * 299.61054 * 3 2 1 8 8 C 1.55417 * 102.31510 * 140.84065 * 7 3 2 9 9 C 1.54951 * 100.88830 * 325.99223 * 8 7 3 10 10 H 1.08997 * 110.30662 * 277.35185 * 9 8 7 11 11 C 1.50701 * 110.30752 * 155.28658 * 9 8 7 12 12 H 1.07999 * 120.00227 * 1.39066 * 11 9 8 13 13 C 1.37877 * 119.99938 * 181.38346 * 11 9 8 14 14 N 1.31518 * 119.99797 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00031 * 180.27361 * 13 11 9 16 16 H 1.48495 * 109.47393 * 269.73108 * 15 13 11 17 17 H 1.48503 * 109.47102 * 29.73164 * 15 13 11 18 18 H 1.48507 * 109.46990 * 149.72862 * 15 13 11 19 19 O 1.43243 * 109.83053 * 57.78538 * 3 2 1 20 20 H 1.09001 * 109.47207 * 186.24051 * 1 2 3 21 21 H 1.09000 * 109.47436 * 306.24163 * 1 2 3 22 22 H 1.08997 * 109.47374 * 66.24336 * 1 2 3 23 23 H 1.09000 * 109.47130 * 239.99951 * 2 1 3 24 24 H 1.09003 * 109.46950 * 120.00286 * 2 1 3 25 25 H 1.08999 * 109.46731 * 60.84116 * 4 3 2 26 26 H 1.09000 * 109.46973 * 180.83665 * 4 3 2 27 27 H 1.09007 * 109.46871 * 300.00298 * 6 5 4 28 28 H 1.08999 * 109.46893 * 59.99603 * 6 5 4 29 29 H 1.08998 * 109.47603 * 180.02562 * 6 5 4 30 30 H 1.09003 * 110.84553 * 259.10321 * 7 3 2 31 31 H 1.09004 * 110.84833 * 22.51436 * 7 3 2 32 32 H 1.08998 * 111.21230 * 208.06037 * 8 7 3 33 33 H 1.09004 * 111.08636 * 83.86340 * 8 7 3 34 34 H 0.96997 * 119.99734 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5696 1.4520 0.0334 5 8 4.0247 0.7734 1.2056 6 6 5.4471 0.7256 1.3343 7 6 1.5390 2.1771 -1.2620 8 6 1.2012 3.5904 -0.7106 9 6 0.7021 3.2375 0.7132 10 1 -0.3450 2.9363 0.6832 11 6 0.8805 4.4150 1.6367 12 1 1.2857 5.3417 1.2582 13 6 0.5262 4.3092 2.9650 14 7 0.0331 3.1805 3.4261 15 14 0.7401 5.7711 4.1080 16 1 2.0891 5.7224 4.7268 17 1 0.5958 7.0301 3.3338 18 1 -0.2947 5.7230 5.1721 19 8 1.5247 2.1400 1.1401 20 1 -0.3634 -1.0216 0.1117 21 1 -0.3634 0.6075 0.8288 22 1 -0.3634 0.4140 -0.9405 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.9554 0.9466 -0.8520 26 1 3.9262 2.4819 0.0482 27 1 5.8723 0.2054 0.4759 28 1 5.8423 1.7406 1.3763 29 1 5.7116 0.1941 2.2484 30 1 2.3240 2.2317 -2.0163 31 1 0.6492 1.6934 -1.6649 32 1 0.4139 4.0646 -1.2966 33 1 2.0911 4.2187 -0.6705 34 1 -0.2158 3.1060 4.3607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388167551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -122.615931 kcal Electronic energy + Delta-G solvation = -15496.390556 eV Core-core repulsion = 13007.323280 eV Total energy + Delta-G solvation = -2489.067276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63763 -38.24724 -35.15452 -33.75094 -32.47984 -30.60679 -28.43794 -26.87283 -24.81537 -24.00470 -22.14005 -20.44555 -18.60055 -17.62275 -16.80199 -16.67303 -16.53826 -15.96112 -15.50712 -14.96536 -14.84581 -14.02963 -13.68072 -13.57444 -13.21892 -12.82033 -12.81486 -12.53168 -12.40569 -12.29521 -12.17573 -11.96385 -11.86815 -11.32330 -11.17117 -10.91315 -10.67135 -10.47976 -9.67391 -8.11095 -6.31410 1.38868 1.40840 1.50891 2.41766 2.92760 3.12559 3.64310 3.85524 4.03033 4.16078 4.29469 4.40820 4.42276 4.53346 4.55640 4.58497 4.71970 4.77639 4.83013 4.88996 4.93898 5.08475 5.13159 5.19641 5.36792 5.48121 5.51562 5.67648 5.82421 6.23943 6.37647 6.68328 7.20255 7.45256 8.96546 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.011188 C = 0.009719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.087724 B = 2502.140753 C = 2880.222851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.083 3.917 4 C 0.068 3.932 5 O -0.410 6.410 6 C 0.026 3.974 7 C -0.135 4.135 8 C -0.141 4.141 9 C 0.203 3.797 10 H -0.007 1.007 11 C -0.557 4.557 12 H 0.062 0.938 13 C 0.023 3.977 14 N -0.900 5.900 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.260 1.260 18 H -0.280 1.280 19 O -0.372 6.372 20 H 0.063 0.937 21 H 0.025 0.975 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -4.450 -9.395 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.042 3.958 4 C -0.008 4.008 5 O -0.329 6.329 6 C -0.070 4.070 7 C -0.172 4.172 8 C -0.179 4.179 9 C 0.148 3.852 10 H 0.010 0.990 11 C -0.594 4.594 12 H 0.080 0.920 13 C -0.179 4.179 14 N -0.537 5.537 15 Si 0.782 3.218 16 H -0.205 1.205 17 H -0.184 1.184 18 H -0.206 1.206 19 O -0.292 6.292 20 H 0.082 0.918 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.325 -4.672 -8.906 11.881 hybrid contribution 0.132 0.863 0.753 1.153 sum 6.458 -3.809 -8.153 11.076 Atomic orbital electron populations 1.21703 0.95984 1.01187 1.01233 1.21637 0.96087 0.95401 1.01787 1.22356 0.91636 0.93652 0.88129 1.22925 0.94580 0.95560 0.87769 1.87966 1.22694 1.77366 1.44861 1.22888 0.80546 1.00846 1.02764 1.23153 1.02601 0.94876 0.96571 1.23226 1.00998 0.96947 0.96732 1.20365 0.89218 0.84745 0.90905 0.98970 1.21574 1.44310 0.97870 0.95655 0.92015 1.25935 0.93663 0.98269 1.00066 1.70191 1.41882 1.26800 1.14875 0.85594 0.77758 0.79902 0.78560 1.20456 1.18401 1.20591 1.88842 1.66593 1.44782 1.28943 0.91807 0.95527 0.91745 0.89231 0.93546 0.90204 0.94605 0.92085 0.94461 0.89211 0.88297 0.89272 0.90407 0.92012 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.45 71.98 0.68 -4.50 16 2 C -0.11 -4.00 5.11 30.59 0.16 -3.84 16 3 C 0.08 3.31 0.73 -10.33 -0.01 3.30 16 4 C 0.07 2.44 4.93 71.98 0.35 2.80 16 5 O -0.41 -16.13 9.93 -142.01 -1.41 -17.54 16 6 C 0.03 0.72 11.01 113.37 1.25 1.97 16 7 C -0.13 -4.48 5.89 31.89 0.19 -4.29 16 8 C -0.14 -5.75 6.54 32.09 0.21 -5.54 16 9 C 0.20 10.87 3.06 30.52 0.09 10.97 16 10 H -0.01 -0.43 7.91 -2.39 -0.02 -0.45 16 11 C -0.56 -32.58 8.80 25.60 0.23 -32.35 16 12 H 0.06 3.47 7.76 -2.91 -0.02 3.44 16 13 C 0.02 1.34 5.42 84.65 0.46 1.80 16 14 N -0.90 -56.77 12.99 21.45 0.28 -56.49 16 15 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 O -0.37 -20.13 9.06 -142.01 -1.29 -21.42 16 20 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 21 H 0.03 1.20 7.07 -2.39 -0.02 1.18 16 22 H 0.06 2.03 6.35 -2.39 -0.02 2.01 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.05 1.87 7.64 -2.39 -0.02 1.85 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.10 2.56 7.82 -2.39 -0.02 2.54 16 31 H 0.09 2.70 5.89 -2.38 -0.01 2.69 16 32 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.67 275.70 4.27 -67.40 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.05 Total: 10.03 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 3.61 Total: -29.70 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -2.70 Total: -38.96 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.67 4.27 -67.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388167551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.213 kcal (2) G-P(sol) polarization free energy of solvation -71.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds