Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48495 * 109.47499 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47119 * 119.99992 * 3 2 1 7 7 C 1.37875 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47137 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.42895 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47036 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.46881 * 65.00230 * 13 12 11 15 15 C 1.42904 * 114.00084 * 179.97438 * 14 13 12 16 16 C 1.53782 * 113.61107 * 249.13720 * 15 14 13 17 17 C 1.53963 * 87.01715 * 220.04549 * 16 15 14 18 18 C 1.53783 * 87.11058 * 25.36590 * 17 16 15 19 19 H 0.96997 * 120.00753 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46608 * 59.99907 * 9 7 2 21 21 H 1.08999 * 109.46703 * 300.00389 * 9 7 2 22 22 H 1.08995 * 109.46983 * 59.99820 * 10 9 7 23 23 H 1.09003 * 109.47124 * 300.00093 * 10 9 7 24 24 H 1.09001 * 109.46798 * 60.00190 * 12 11 10 25 25 H 1.08993 * 109.47318 * 299.99656 * 12 11 10 26 26 H 1.08992 * 109.47046 * 185.00128 * 13 12 11 27 27 H 1.08997 * 109.47395 * 305.00669 * 13 12 11 28 28 H 1.08993 * 112.84532 * 20.33389 * 15 14 13 29 29 H 1.08998 * 113.61845 * 334.56694 * 16 15 14 30 30 H 1.08997 * 113.61192 * 105.47625 * 16 15 14 31 31 H 1.08997 * 113.53694 * 270.81408 * 17 16 15 32 32 H 1.09000 * 113.66424 * 139.93612 * 17 16 15 33 33 H 1.08998 * 113.61716 * 220.09024 * 18 17 16 34 34 H 1.08998 * 113.69022 * 89.19411 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 8 1.5311 -4.8996 -0.0011 12 6 2.3711 -6.0556 -0.0018 13 6 1.5039 -7.3162 -0.0017 14 8 0.7644 -7.3856 -1.2225 15 6 -0.0819 -8.5325 -1.3250 16 6 0.3846 -9.5499 -2.3796 17 6 -1.0995 -9.7255 -2.7499 18 6 -1.3234 -8.3054 -2.2038 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6042 0.8894 23 1 2.8722 -3.6042 -0.8905 24 1 3.0003 -6.0479 0.8882 25 1 3.0002 -6.0471 -0.8917 26 1 2.1414 -8.1957 0.0874 27 1 0.8126 -7.2817 0.8403 28 1 -0.3080 -8.9795 -0.3570 29 1 0.9841 -9.1094 -3.1762 30 1 0.8377 -10.4446 -1.9527 31 1 -1.6036 -10.5000 -2.1719 32 1 -1.2755 -9.8138 -3.8219 33 1 -2.2468 -8.1968 -1.6351 34 1 -1.1920 -7.5230 -2.9512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400702038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = -87.876527 kcal Electronic energy + Delta-G solvation = -13950.025623 eV Core-core repulsion = 11462.464761 eV Total energy + Delta-G solvation = -2487.560862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.25006 -37.39613 -35.71312 -33.16734 -30.50423 -28.71187 -25.71999 -24.73027 -24.39475 -22.23255 -20.77236 -19.68821 -17.26036 -16.63752 -15.80858 -15.57070 -15.18945 -14.64177 -14.43943 -14.25587 -13.48227 -12.59338 -12.49643 -12.29078 -12.04892 -12.00384 -11.52694 -11.04931 -10.95083 -10.77411 -10.59385 -10.48805 -10.36079 -10.19717 -9.47443 -9.30345 -9.16033 -8.83603 -8.31373 -5.98802 -4.02493 3.34914 3.38826 3.41199 3.78985 4.29319 4.50485 4.53954 4.56925 4.77561 4.80479 5.18217 5.35037 5.36870 5.39084 5.54273 5.65609 5.70712 5.72773 5.74421 5.89803 5.94964 6.09614 6.23484 6.32062 6.36209 6.94988 7.38329 7.60787 7.85549 7.87707 8.17654 8.41066 9.04032 9.60803 11.12874 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054846 B = 0.004580 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.400081 B = 6111.758172 C = 6444.316462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.068 3.932 11 O -0.384 6.384 12 C 0.062 3.938 13 C 0.065 3.935 14 O -0.361 6.361 15 C 0.060 3.940 16 C -0.158 4.158 17 C -0.142 4.142 18 C -0.137 4.137 19 H 0.262 0.738 20 H 0.025 0.975 21 H 0.023 0.977 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -18.505 -2.089 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.304 6.304 12 C -0.016 4.016 13 C -0.011 4.011 14 O -0.280 6.280 15 C 0.002 3.998 16 C -0.196 4.196 17 C -0.180 4.180 18 C -0.174 4.174 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.719 -18.242 -2.231 18.392 hybrid contribution 0.782 0.727 0.248 1.096 sum 1.501 -17.515 -1.983 17.690 Atomic orbital electron populations 1.69972 1.06073 1.26826 1.50130 1.24994 0.94870 0.99253 0.95155 0.86587 0.79506 0.82850 0.78621 1.20171 1.21190 1.20202 1.21036 0.92962 0.90637 1.51639 0.92623 1.19057 0.94257 0.89404 0.98454 1.22873 0.96390 0.83400 0.98073 1.87991 1.33558 1.13611 1.95234 1.22377 0.92860 0.86227 1.00107 1.22581 0.94684 0.96325 0.87542 1.88086 1.58326 1.43728 1.37865 1.23703 0.91662 0.87116 0.97352 1.23531 0.96913 0.99090 1.00071 1.22687 0.96617 0.97256 1.01422 1.23188 0.97263 0.97340 0.99659 0.92819 0.95663 0.95822 0.94840 0.94719 0.92624 0.93228 0.92598 0.92600 0.89897 0.89276 0.91645 0.90227 0.90897 0.91048 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.37 9.11 -34.44 -0.31 -15.69 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 10 C 0.07 1.58 5.88 37.16 0.22 1.80 16 11 O -0.38 -8.38 10.31 -40.09 -0.41 -8.79 16 12 C 0.06 1.00 6.32 37.16 0.23 1.24 16 13 C 0.07 0.91 6.16 37.16 0.23 1.14 16 14 O -0.36 -5.73 10.32 -40.09 -0.41 -6.15 16 15 C 0.06 0.72 4.30 -25.92 -0.11 0.61 16 16 C -0.16 -1.58 7.93 -25.82 -0.20 -1.79 16 17 C -0.14 -1.27 8.09 -25.82 -0.21 -1.48 16 18 C -0.14 -1.55 7.91 -25.92 -0.21 -1.76 16 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 20 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -32.39 289.18 -7.23 -39.62 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -5.87 Total: -5.45 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.61 Total: -13.73 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.83 Total: -14.93 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.39 -7.23 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400702038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.257 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds