Wall clock time and date at job start Mon Mar 30 2020 02:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48495 * 109.47499 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47119 * 119.99992 * 3 2 1 7 7 C 1.37875 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00275 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47137 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.42895 * 113.99948 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47036 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.46881 * 65.00230 * 13 12 11 15 15 C 1.42904 * 114.00084 * 179.97438 * 14 13 12 16 16 C 1.53782 * 113.61107 * 249.13720 * 15 14 13 17 17 C 1.53963 * 87.01715 * 220.04549 * 16 15 14 18 18 C 1.53783 * 87.11058 * 25.36590 * 17 16 15 19 19 H 0.96997 * 120.00753 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46608 * 59.99907 * 9 7 2 21 21 H 1.08999 * 109.46703 * 300.00389 * 9 7 2 22 22 H 1.08995 * 109.46983 * 59.99820 * 10 9 7 23 23 H 1.09003 * 109.47124 * 300.00093 * 10 9 7 24 24 H 1.09001 * 109.46798 * 60.00190 * 12 11 10 25 25 H 1.08993 * 109.47318 * 299.99656 * 12 11 10 26 26 H 1.08992 * 109.47046 * 185.00128 * 13 12 11 27 27 H 1.08997 * 109.47395 * 305.00669 * 13 12 11 28 28 H 1.08993 * 112.84532 * 20.33389 * 15 14 13 29 29 H 1.08998 * 113.61845 * 334.56694 * 16 15 14 30 30 H 1.08997 * 113.61192 * 105.47625 * 16 15 14 31 31 H 1.08997 * 113.53694 * 270.81408 * 17 16 15 32 32 H 1.09000 * 113.66424 * 139.93612 * 17 16 15 33 33 H 1.08998 * 113.61716 * 220.09024 * 18 17 16 34 34 H 1.08998 * 113.69022 * 89.19411 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 8 1.5311 -4.8996 -0.0011 12 6 2.3711 -6.0556 -0.0018 13 6 1.5039 -7.3162 -0.0017 14 8 0.7644 -7.3856 -1.2225 15 6 -0.0819 -8.5325 -1.3250 16 6 0.3846 -9.5499 -2.3796 17 6 -1.0995 -9.7255 -2.7499 18 6 -1.3234 -8.3054 -2.2038 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6042 0.8894 23 1 2.8722 -3.6042 -0.8905 24 1 3.0003 -6.0479 0.8882 25 1 3.0002 -6.0471 -0.8917 26 1 2.1414 -8.1957 0.0874 27 1 0.8126 -7.2817 0.8403 28 1 -0.3080 -8.9795 -0.3570 29 1 0.9841 -9.1094 -3.1762 30 1 0.8377 -10.4446 -1.9527 31 1 -1.6036 -10.5000 -2.1719 32 1 -1.2755 -9.8138 -3.8219 33 1 -2.2468 -8.1968 -1.6351 34 1 -1.1920 -7.5230 -2.9512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400702038.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:37 Heat of formation + Delta-G solvation = -108.853757 kcal Electronic energy + Delta-G solvation = -13950.935264 eV Core-core repulsion = 11462.464761 eV Total energy + Delta-G solvation = -2488.470503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19675 -38.91287 -36.84846 -35.33636 -32.35375 -30.26407 -26.61756 -26.52116 -25.50519 -23.45679 -22.83809 -20.53511 -18.76369 -18.23583 -17.38119 -16.69861 -16.68081 -16.42475 -15.79912 -15.46029 -14.84326 -14.27783 -14.13091 -13.48911 -13.37442 -13.12946 -12.88376 -12.76948 -12.44016 -12.39650 -12.08993 -11.77563 -11.60853 -11.44553 -11.37049 -11.26577 -10.65704 -10.41448 -10.32238 -8.23473 -6.37583 1.40905 1.45720 1.53734 2.38043 2.79873 2.93067 3.09928 3.68257 3.73156 3.92641 3.97926 4.17428 4.24482 4.39894 4.42332 4.48012 4.55652 4.57937 4.80455 4.82748 4.85821 4.93366 5.03602 5.04582 5.25083 5.35809 5.42535 5.56511 5.72160 6.10589 6.36718 6.48829 6.78221 7.32384 8.89656 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054846 B = 0.004580 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.400081 B = 6111.758172 C = 6444.316462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.084 3.916 11 O -0.413 6.413 12 C 0.051 3.949 13 C 0.065 3.935 14 O -0.399 6.399 15 C 0.046 3.954 16 C -0.152 4.152 17 C -0.128 4.128 18 C -0.151 4.151 19 H 0.266 0.734 20 H -0.011 1.011 21 H -0.006 1.006 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 -19.353 -1.804 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.087 0.913 9 C -0.010 4.010 10 C 0.008 3.992 11 O -0.333 6.333 12 C -0.025 4.025 13 C -0.011 4.011 14 O -0.318 6.318 15 C -0.011 4.011 16 C -0.190 4.190 17 C -0.165 4.165 18 C -0.188 4.188 19 H 0.075 0.925 20 H 0.007 0.993 21 H 0.012 0.988 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.213 -19.121 -1.946 19.347 hybrid contribution 0.264 0.905 0.158 0.956 sum 2.478 -18.216 -1.788 18.470 Atomic orbital electron populations 1.70129 1.08148 1.28200 1.50794 1.26091 0.95833 1.03801 0.94171 0.85319 0.78098 0.77076 0.79433 1.18891 1.20691 1.18701 1.21463 0.93789 0.91410 1.51978 0.91267 1.18935 0.94670 0.92118 0.95264 1.22473 0.94743 0.82783 0.99155 1.87938 1.35380 1.14519 1.95489 1.22771 0.93253 0.84941 1.01552 1.22683 0.94971 0.96434 0.86979 1.88041 1.59288 1.45769 1.38739 1.24054 0.91536 0.86742 0.98777 1.23470 0.97555 0.99001 0.98989 1.22679 0.95836 0.95830 1.02153 1.23261 0.97455 0.98597 0.99508 0.92513 0.99252 0.98804 0.93135 0.93985 0.89955 0.92834 0.88716 0.92719 0.88151 0.90513 0.89576 0.88128 0.90159 0.90769 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.86 13.29 21.45 0.28 -58.58 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 44.73 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.55 -32.45 9.11 25.60 0.23 -32.22 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.03 1.59 5.34 29.85 0.16 1.75 16 10 C 0.08 3.91 5.88 71.98 0.42 4.34 16 11 O -0.41 -18.13 10.31 -144.34 -1.49 -19.62 16 12 C 0.05 1.59 6.32 71.98 0.45 2.05 16 13 C 0.07 1.73 6.16 71.98 0.44 2.17 16 14 O -0.40 -12.52 10.32 -144.34 -1.49 -14.01 16 15 C 0.05 1.07 4.30 31.12 0.13 1.20 16 16 C -0.15 -2.78 7.93 31.18 0.25 -2.53 16 17 C -0.13 -2.05 8.09 31.18 0.25 -1.79 16 18 C -0.15 -3.40 7.91 31.12 0.25 -3.15 16 19 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 20 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.91 7.88 -2.39 -0.02 1.89 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.25 289.18 3.43 -67.82 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.04 Total: 5.39 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.06 Total: -27.77 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.28 Total: -58.58 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.98 Total: -33.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.25 3.43 -67.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400702038.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.029 kcal (2) G-P(sol) polarization free energy of solvation -71.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds