Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48501 * 109.46758 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47226 * 29.99920 * 3 2 1 6 6 H 1.48494 * 109.47120 * 150.00182 * 3 2 1 7 7 C 1.37873 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47038 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.42901 * 113.99688 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.46824 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47113 * 64.99778 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47142 * 59.99515 * 9 7 2 21 21 H 1.09000 * 109.46981 * 300.00109 * 9 7 2 22 22 H 1.08998 * 109.47927 * 59.99535 * 10 9 7 23 23 H 1.09001 * 109.46903 * 299.99114 * 10 9 7 24 24 H 1.09000 * 109.47317 * 59.99739 * 12 11 10 25 25 H 1.09002 * 109.47468 * 299.99096 * 12 11 10 26 26 H 1.09007 * 109.46516 * 304.99711 * 13 12 11 27 27 H 1.09004 * 109.47113 * 185.00179 * 13 12 11 28 28 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 29 29 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5307 -4.8996 0.0012 12 6 2.3707 -6.0556 0.0018 13 6 1.5034 -7.3162 0.0017 14 8 0.7648 -7.3861 -1.2196 15 6 -0.0824 -8.5324 -1.3216 16 6 -0.8197 -8.5039 -2.6619 17 6 -2.3445 -8.3825 -2.6268 18 6 -1.6916 -9.7108 -3.0143 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8713 -3.6039 0.8922 23 1 2.8725 -3.6047 -0.8878 24 1 2.9994 -6.0476 0.8922 25 1 3.0006 -6.0476 -0.8878 26 1 0.8116 -7.2812 0.8433 27 1 2.1409 -8.1958 0.0917 28 1 -0.8071 -8.5223 -0.5075 29 1 0.5219 -9.4374 -1.2589 30 1 -0.2937 -8.0078 -3.4775 31 1 -2.8223 -8.3225 -1.6490 32 1 -2.8218 -7.8062 -3.4194 33 1 -1.7393 -10.0084 -4.0619 34 1 -1.7395 -10.5253 -2.2916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400721941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -83.960079 kcal Electronic energy + Delta-G solvation = -13775.462286 eV Core-core repulsion = 11288.071254 eV Total energy + Delta-G solvation = -2487.391032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.52674 -37.32429 -36.22630 -33.18838 -30.68986 -28.98155 -26.60975 -24.44933 -22.52355 -22.23891 -20.82594 -20.62287 -17.04602 -16.66271 -16.09860 -15.61503 -14.97228 -14.90311 -14.53706 -14.36028 -13.69977 -12.92563 -12.51142 -12.23517 -12.07373 -11.66670 -11.31455 -11.09752 -10.93635 -10.70358 -10.51158 -10.44779 -10.28042 -10.17597 -9.50554 -9.37945 -9.14855 -8.83751 -8.31520 -5.98913 -4.02476 3.33642 3.39138 3.42478 3.46130 3.84048 4.29268 4.54485 4.69504 4.76870 4.93286 5.18788 5.23997 5.36882 5.37285 5.42632 5.48001 5.53866 5.65274 5.74160 5.77857 5.93518 5.97026 6.12527 6.31981 6.36157 6.95111 7.30001 7.60922 7.85683 7.87805 8.17664 8.41126 9.04292 9.60872 11.12807 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.004616 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.426749 B = 6063.745266 C = 6574.454844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.068 3.932 11 O -0.384 6.384 12 C 0.062 3.938 13 C 0.067 3.933 14 O -0.373 6.373 15 C 0.092 3.908 16 C -0.151 4.151 17 C -0.175 4.175 18 C -0.177 4.177 19 H 0.261 0.739 20 H 0.025 0.975 21 H 0.024 0.976 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -18.217 -2.345 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.304 6.304 12 C -0.015 4.015 13 C -0.010 4.010 14 O -0.292 6.292 15 C 0.016 3.984 16 C -0.169 4.169 17 C -0.212 4.212 18 C -0.215 4.215 19 H 0.071 0.929 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.078 -17.960 -2.481 18.130 hybrid contribution 0.732 0.741 0.208 1.062 sum 0.654 -17.219 -2.273 17.380 Atomic orbital electron populations 1.69989 1.06070 1.26698 1.50236 1.24999 0.94874 0.99269 0.95177 0.86525 0.79736 0.83187 0.78137 1.20579 1.21137 1.19850 1.21070 0.92997 0.90621 1.51483 0.92571 1.19062 0.94268 0.89420 0.98471 1.22874 0.96387 0.83388 0.98084 1.87996 1.33544 1.13612 1.95238 1.22371 0.92821 0.86170 1.00162 1.22542 0.94573 0.96476 0.87377 1.88011 1.58896 1.44180 1.38125 1.21963 0.92613 0.88406 0.95462 1.22131 0.93059 1.02742 0.99012 1.23064 0.95062 0.99749 1.03353 1.22965 1.04395 0.91838 1.02253 0.92885 0.95654 0.95810 0.94823 0.94706 0.92523 0.93179 0.92574 0.92526 0.93293 0.93373 0.86793 0.88608 0.88513 0.88552 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.70 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.58 5.88 37.15 0.22 1.80 16 11 O -0.38 -8.38 10.31 -40.08 -0.41 -8.79 16 12 C 0.06 1.01 6.32 37.16 0.23 1.24 16 13 C 0.07 0.93 6.32 37.16 0.23 1.17 16 14 O -0.37 -5.96 10.31 -40.08 -0.41 -6.37 16 15 C 0.09 1.12 6.22 37.16 0.23 1.35 16 16 C -0.15 -1.75 6.06 -90.62 -0.55 -2.29 16 17 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16 18 C -0.18 -1.57 10.25 -26.73 -0.27 -1.85 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.56 7.88 -51.93 -0.41 0.16 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -32.60 293.70 -7.28 -39.89 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -5.86 Total: -5.11 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.74 Total: -14.17 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.83 Total: -15.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.60 -7.28 -39.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400721941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.071 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds