Wall clock time and date at job start Mon Mar 30 2020 02:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48501 * 109.46758 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47226 * 29.99920 * 3 2 1 6 6 H 1.48494 * 109.47120 * 150.00182 * 3 2 1 7 7 C 1.37873 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00040 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47038 * 180.02562 * 9 7 2 11 11 O 1.42905 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.42901 * 113.99688 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.46824 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.47113 * 64.99778 * 13 12 11 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47142 * 59.99515 * 9 7 2 21 21 H 1.09000 * 109.46981 * 300.00109 * 9 7 2 22 22 H 1.08998 * 109.47927 * 59.99535 * 10 9 7 23 23 H 1.09001 * 109.46903 * 299.99114 * 10 9 7 24 24 H 1.09000 * 109.47317 * 59.99739 * 12 11 10 25 25 H 1.09002 * 109.47468 * 299.99096 * 12 11 10 26 26 H 1.09007 * 109.46516 * 304.99711 * 13 12 11 27 27 H 1.09004 * 109.47113 * 185.00179 * 13 12 11 28 28 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 29 29 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 30 30 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 31 31 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 32 32 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 33 33 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 34 34 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5307 -4.8996 0.0012 12 6 2.3707 -6.0556 0.0018 13 6 1.5034 -7.3162 0.0017 14 8 0.7648 -7.3861 -1.2196 15 6 -0.0824 -8.5324 -1.3216 16 6 -0.8197 -8.5039 -2.6619 17 6 -2.3445 -8.3825 -2.6268 18 6 -1.6916 -9.7108 -3.0143 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 2.8713 -3.6039 0.8922 23 1 2.8725 -3.6047 -0.8878 24 1 2.9994 -6.0476 0.8922 25 1 3.0006 -6.0476 -0.8878 26 1 0.8116 -7.2812 0.8433 27 1 2.1409 -8.1958 0.0917 28 1 -0.8071 -8.5223 -0.5075 29 1 0.5219 -9.4374 -1.2589 30 1 -0.2937 -8.0078 -3.4775 31 1 -2.8223 -8.3225 -1.6490 32 1 -2.8218 -7.8062 -3.4194 33 1 -1.7393 -10.0084 -4.0619 34 1 -1.7395 -10.5253 -2.2916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400721941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:32 Heat of formation + Delta-G solvation = -104.942405 kcal Electronic energy + Delta-G solvation = -13776.372148 eV Core-core repulsion = 11288.071254 eV Total energy + Delta-G solvation = -2488.300894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.62060 -38.69695 -37.32211 -35.36183 -32.45107 -30.56689 -27.63330 -26.52611 -23.48824 -23.24471 -22.84140 -21.56008 -18.75324 -18.05577 -17.50122 -16.87941 -16.60615 -16.38225 -16.13777 -15.44465 -14.92657 -14.39768 -14.27909 -13.81626 -13.41143 -13.04406 -12.83206 -12.41849 -12.40560 -12.23642 -12.09876 -11.92804 -11.47967 -11.38009 -11.31752 -11.15930 -10.66197 -10.43371 -10.40198 -8.23557 -6.37484 1.41026 1.44109 1.55272 2.38047 2.55588 2.92955 2.97700 3.09983 3.84972 3.94612 4.07041 4.16679 4.25885 4.34348 4.40671 4.43224 4.53472 4.55943 4.59798 4.68867 4.75967 4.81373 4.93820 5.00073 5.21501 5.24505 5.36276 5.56800 5.72448 6.10621 6.29036 6.47288 6.78598 7.32505 8.89809 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.004616 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.426749 B = 6063.745266 C = 6574.454844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.084 3.916 11 O -0.414 6.414 12 C 0.051 3.949 13 C 0.066 3.934 14 O -0.410 6.410 15 C 0.090 3.910 16 C -0.177 4.177 17 C -0.189 4.189 18 C -0.149 4.149 19 H 0.266 0.734 20 H -0.011 1.011 21 H -0.006 1.006 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -19.000 -2.147 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.087 0.913 9 C -0.010 4.010 10 C 0.008 3.992 11 O -0.334 6.334 12 C -0.025 4.025 13 C -0.010 4.010 14 O -0.331 6.331 15 C 0.014 3.986 16 C -0.195 4.195 17 C -0.226 4.226 18 C -0.186 4.186 19 H 0.075 0.925 20 H 0.007 0.993 21 H 0.012 0.988 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.388 -18.775 -2.282 18.964 hybrid contribution 0.228 0.889 0.133 0.928 sum 1.616 -17.885 -2.149 18.086 Atomic orbital electron populations 1.70142 1.08148 1.28116 1.50897 1.26096 0.95839 1.03817 0.94208 0.85261 0.78575 0.77415 0.78640 1.19594 1.20558 1.18215 1.21488 0.93790 0.91389 1.51807 0.91256 1.18940 0.94687 0.92150 0.95267 1.22473 0.94730 0.82762 0.99186 1.87942 1.35400 1.14541 1.95500 1.22775 0.93217 0.84847 1.01671 1.22665 0.94894 0.96708 0.86720 1.87963 1.59823 1.46202 1.39067 1.22141 0.92649 0.88146 0.95710 1.22175 0.93448 1.05261 0.98597 1.23147 0.94427 1.01529 1.03525 1.23065 1.00924 0.91084 1.03511 0.92531 0.99266 0.98797 0.93102 0.93948 0.89784 0.92729 0.92723 0.88390 0.93063 0.90946 0.88431 0.88599 0.88683 0.87195 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.89 13.29 21.45 0.28 -58.60 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.98 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.08 3.91 5.88 71.98 0.42 4.33 16 11 O -0.41 -18.13 10.31 -144.34 -1.49 -19.61 16 12 C 0.05 1.58 6.32 71.99 0.45 2.04 16 13 C 0.07 1.73 6.32 71.99 0.45 2.19 16 14 O -0.41 -12.92 10.31 -144.34 -1.49 -14.41 16 15 C 0.09 2.08 6.22 71.98 0.45 2.53 16 16 C -0.18 -4.01 6.06 -10.79 -0.07 -4.07 16 17 C -0.19 -3.90 10.18 30.60 0.31 -3.58 16 18 C -0.15 -2.37 10.25 30.60 0.31 -2.05 16 19 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 20 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 21 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 22 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.05 1.14 7.88 -2.39 -0.02 1.12 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.10 1.93 8.03 -2.39 -0.02 1.91 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.66 293.70 3.57 -68.09 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.04 Total: 6.38 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.19 Total: -28.64 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.28 Total: -58.60 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -2.98 Total: -34.02 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.66 3.57 -68.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400721941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.854 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds