Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47430 * 2 1 4 4 C 1.36940 * 119.99793 * 263.47856 * 3 2 1 5 5 H 1.08001 * 119.99780 * 187.42932 * 4 3 2 6 6 C 1.38817 * 120.00204 * 7.42954 * 4 3 2 7 7 N 1.31621 * 119.99523 * 25.70258 * 6 4 3 8 8 Si 1.86795 * 119.99847 * 205.70332 * 6 4 3 9 9 H 1.48498 * 109.47402 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46882 * 120.00248 * 8 6 4 11 11 H 1.48497 * 109.47020 * 239.99590 * 8 6 4 12 12 C 1.46500 * 120.00225 * 83.47418 * 3 2 1 13 13 C 1.52998 * 109.46924 * 93.23199 * 12 3 2 14 14 H 1.09010 * 110.46347 * 52.39729 * 13 12 3 15 15 C 1.54087 * 110.52472 * 175.02540 * 13 12 3 16 16 N 1.47088 * 103.77650 * 118.62962 * 15 13 12 17 17 C 1.34001 * 108.88288 * 0.02562 * 16 15 13 18 18 O 1.21514 * 123.07443 * 180.02562 * 17 16 15 19 19 O 1.33767 * 113.85683 * 359.97438 * 17 16 15 20 20 H 1.09006 * 109.47355 * 293.11554 * 1 2 3 21 21 H 1.09004 * 109.47318 * 53.11244 * 1 2 3 22 22 H 1.09002 * 109.47584 * 173.11141 * 1 2 3 23 23 H 1.09000 * 109.47109 * 119.99844 * 2 1 3 24 24 H 1.09000 * 109.47182 * 239.99433 * 2 1 3 25 25 H 0.96998 * 119.99263 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.46938 * 213.23567 * 12 3 2 27 27 H 1.09001 * 109.46925 * 333.23856 * 12 3 2 28 28 H 1.08993 * 110.56928 * 237.20943 * 15 13 12 29 29 H 1.09003 * 110.55931 * 0.06413 * 15 13 12 30 30 H 0.97006 * 125.55733 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3736 1.9818 -1.1783 5 1 2.8451 2.9534 -1.1684 6 6 2.1277 1.3418 -2.3853 7 7 1.1542 0.4606 -2.4766 8 14 3.1783 1.7312 -3.8799 9 1 4.1974 2.7486 -3.5172 10 1 3.8564 0.4942 -4.3441 11 1 2.3160 2.2605 -4.9668 12 6 2.1266 2.1199 1.2605 13 6 3.5412 1.9649 1.8225 14 1 4.2821 2.2300 1.0682 15 6 3.7196 2.8324 3.0833 16 7 4.0183 1.8554 4.1415 17 6 4.0189 0.6258 3.6088 18 8 4.2371 -0.3780 4.2578 19 8 3.7562 0.6042 2.2973 20 1 -0.3634 0.4035 0.9452 21 1 -0.3634 0.6169 -0.8220 22 1 -0.3634 -1.0202 -0.1233 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 0.9822 0.0137 -3.3201 26 1 1.9201 3.1751 1.0820 27 1 1.4060 1.7245 1.9763 28 1 4.5510 3.5258 2.9566 29 1 2.8003 3.3727 3.3095 30 1 4.1873 2.0667 5.0730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = -44.139203 kcal Electronic energy + Delta-G solvation = -14919.720114 eV Core-core repulsion = 12330.515501 eV Total energy + Delta-G solvation = -2589.204613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.12131 -37.09611 -35.77282 -34.40000 -31.80247 -30.29230 -28.48621 -25.44890 -23.32172 -22.33263 -21.70990 -20.19596 -17.82813 -16.73405 -16.49505 -15.98809 -15.10332 -14.41738 -14.12367 -13.76062 -13.36449 -13.17960 -13.05067 -12.25156 -11.71103 -11.63712 -11.34037 -10.80884 -10.73905 -10.50319 -10.37774 -10.19997 -10.00837 -9.74632 -9.35053 -9.21208 -8.36976 -6.95250 -5.82004 -3.12085 3.03976 3.07259 3.36907 3.45983 3.46999 3.93529 4.37063 4.56664 4.97491 5.18255 5.33144 5.49397 5.54549 5.83017 5.93245 6.27028 6.45439 6.63343 6.92460 6.96391 7.09781 7.15777 7.61630 7.67701 7.81951 8.04255 8.32661 8.36884 9.18302 9.81753 10.26929 11.22531 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.038607 B = 0.009141 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.087146 B = 3062.381194 C = 3344.540646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.162 3.838 3 N -0.590 5.590 4 C -0.262 4.262 5 H 0.075 0.925 6 C 0.003 3.997 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.293 1.293 12 C 0.146 3.854 13 C 0.045 3.955 14 H 0.114 0.886 15 C 0.069 3.931 16 N -0.743 5.743 17 C 0.640 3.360 18 O -0.542 6.542 19 O -0.308 6.308 20 H 0.007 0.993 21 H 0.081 0.919 22 H 0.024 0.976 23 H 0.012 0.988 24 H 0.090 0.910 25 H 0.252 0.748 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 6.365 8.725 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.038 3.962 3 N -0.310 5.310 4 C -0.390 4.390 5 H 0.093 0.907 6 C -0.195 4.195 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.220 1.220 12 C 0.016 3.984 13 C -0.014 4.014 14 H 0.132 0.868 15 C -0.056 4.056 16 N -0.415 5.415 17 C 0.393 3.607 18 O -0.429 6.429 19 O -0.217 6.217 20 H 0.026 0.974 21 H 0.100 0.900 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.016 5.491 8.501 10.560 hybrid contribution 0.586 0.508 -0.392 0.869 sum 3.601 5.999 8.108 10.710 Atomic orbital electron populations 1.22177 0.99436 0.99326 0.99226 1.20881 0.92062 0.84180 0.99102 1.44124 1.75159 1.10791 1.00941 1.19252 1.33334 1.02804 0.83635 0.90707 1.24723 0.97834 0.99618 0.97358 1.70232 1.27330 1.30905 1.24878 0.86362 0.80670 0.77541 0.83048 1.20469 1.21574 1.22029 1.21020 0.90459 0.97222 0.89687 1.25314 1.05208 0.76277 0.94595 0.86844 1.22897 1.02644 0.92838 0.87264 1.45986 1.76177 1.06794 1.12566 1.18820 0.75926 0.84139 0.81783 1.91011 1.55288 1.35360 1.61239 1.87426 1.82372 1.31088 1.20778 0.97429 0.90037 0.95648 0.96941 0.89205 0.93738 0.91183 0.93166 0.89645 0.89219 0.73059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.61 37.15 0.36 -2.96 16 2 C 0.16 4.00 5.58 -4.05 -0.02 3.97 16 3 N -0.59 -13.95 2.54 -173.24 -0.44 -14.39 16 4 C -0.26 -6.69 9.70 -15.06 -0.15 -6.83 16 5 H 0.08 1.82 7.95 -52.49 -0.42 1.40 16 6 C 0.00 0.07 4.90 -17.43 -0.09 -0.01 16 7 N -0.89 -24.49 8.79 55.49 0.49 -24.00 16 8 Si 0.89 20.94 29.62 -169.99 -5.04 15.90 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.15 2.66 5.23 -4.04 -0.02 2.64 16 13 C 0.05 0.72 4.10 -26.16 -0.11 0.61 16 14 H 0.11 1.85 8.14 -51.92 -0.42 1.42 16 15 C 0.07 0.76 7.71 -3.15 -0.02 0.73 16 16 N -0.74 -9.30 6.40 -64.74 -0.41 -9.72 16 17 C 0.64 11.54 9.16 53.71 0.49 12.03 16 18 O -0.54 -11.63 18.04 -19.12 -0.34 -11.98 16 19 O -0.31 -6.03 10.25 -37.82 -0.39 -6.42 16 20 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 21 H 0.08 2.12 6.71 -51.93 -0.35 1.77 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.01 0.30 7.56 -51.93 -0.39 -0.09 16 24 H 0.09 2.47 5.76 -51.93 -0.30 2.17 16 25 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 27 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16 30 H 0.43 4.08 8.96 -40.82 -0.37 3.71 16 LS Contribution 254.63 15.07 3.84 3.84 Total: -1.00 -31.28 254.63 -5.74 -37.03 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.89 Total: -0.44 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 0.44 Total: 10.18 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.37 Total: -48.11 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.73 Total: -18.40 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.28 -5.74 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds