Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47430 * 2 1 4 4 C 1.36940 * 119.99793 * 263.47856 * 3 2 1 5 5 H 1.08001 * 119.99780 * 187.42932 * 4 3 2 6 6 C 1.38817 * 120.00204 * 7.42954 * 4 3 2 7 7 N 1.31621 * 119.99523 * 25.70258 * 6 4 3 8 8 Si 1.86795 * 119.99847 * 205.70332 * 6 4 3 9 9 H 1.48498 * 109.47402 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46882 * 120.00248 * 8 6 4 11 11 H 1.48497 * 109.47020 * 239.99590 * 8 6 4 12 12 C 1.46500 * 120.00225 * 83.47418 * 3 2 1 13 13 C 1.52998 * 109.46924 * 93.23199 * 12 3 2 14 14 H 1.09010 * 110.46347 * 52.39729 * 13 12 3 15 15 C 1.54087 * 110.52472 * 175.02540 * 13 12 3 16 16 N 1.47088 * 103.77650 * 118.62962 * 15 13 12 17 17 C 1.34001 * 108.88288 * 0.02562 * 16 15 13 18 18 O 1.21514 * 123.07443 * 180.02562 * 17 16 15 19 19 O 1.33767 * 113.85683 * 359.97438 * 17 16 15 20 20 H 1.09006 * 109.47355 * 293.11554 * 1 2 3 21 21 H 1.09004 * 109.47318 * 53.11244 * 1 2 3 22 22 H 1.09002 * 109.47584 * 173.11141 * 1 2 3 23 23 H 1.09000 * 109.47109 * 119.99844 * 2 1 3 24 24 H 1.09000 * 109.47182 * 239.99433 * 2 1 3 25 25 H 0.96998 * 119.99263 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.46938 * 213.23567 * 12 3 2 27 27 H 1.09001 * 109.46925 * 333.23856 * 12 3 2 28 28 H 1.08993 * 110.56928 * 237.20943 * 15 13 12 29 29 H 1.09003 * 110.55931 * 0.06413 * 15 13 12 30 30 H 0.97006 * 125.55733 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3736 1.9818 -1.1783 5 1 2.8451 2.9534 -1.1684 6 6 2.1277 1.3418 -2.3853 7 7 1.1542 0.4606 -2.4766 8 14 3.1783 1.7312 -3.8799 9 1 4.1974 2.7486 -3.5172 10 1 3.8564 0.4942 -4.3441 11 1 2.3160 2.2605 -4.9668 12 6 2.1266 2.1199 1.2605 13 6 3.5412 1.9649 1.8225 14 1 4.2821 2.2300 1.0682 15 6 3.7196 2.8324 3.0833 16 7 4.0183 1.8554 4.1415 17 6 4.0189 0.6258 3.6088 18 8 4.2371 -0.3780 4.2578 19 8 3.7562 0.6042 2.2973 20 1 -0.3634 0.4035 0.9452 21 1 -0.3634 0.6169 -0.8220 22 1 -0.3634 -1.0202 -0.1233 23 1 1.8933 -0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 0.9822 0.0137 -3.3201 26 1 1.9201 3.1751 1.0820 27 1 1.4060 1.7245 1.9763 28 1 4.5510 3.5258 2.9566 29 1 2.8003 3.3727 3.3095 30 1 4.1873 2.0667 5.0730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = -67.441514 kcal Electronic energy + Delta-G solvation = -14920.730578 eV Core-core repulsion = 12330.515501 eV Total energy + Delta-G solvation = -2590.215077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.42065 -38.60732 -37.52728 -35.59490 -33.56194 -32.03091 -30.14248 -26.96629 -25.03812 -23.69097 -23.08256 -21.97817 -19.16060 -18.45666 -17.84028 -17.39867 -16.88436 -15.80133 -15.68260 -15.41557 -14.80535 -14.73446 -14.28089 -13.92351 -13.50329 -13.24327 -12.92731 -12.66423 -12.45975 -12.34030 -11.89071 -11.86428 -11.62816 -11.60979 -11.29490 -10.36207 -10.23962 -8.83948 -7.79271 -5.08917 1.50000 1.55652 1.62376 1.69869 1.90613 2.56142 2.76925 3.24363 3.37921 3.83673 3.99927 4.05774 4.50918 4.65998 4.68605 4.77406 4.92031 5.02150 5.08767 5.22368 5.26974 5.66102 5.81189 5.89500 6.08517 6.36907 6.40361 7.13877 7.21553 7.93538 8.36535 9.24743 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.038607 B = 0.009141 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.087146 B = 3062.381194 C = 3344.540646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.169 3.831 3 N -0.608 5.608 4 C -0.256 4.256 5 H 0.089 0.911 6 C -0.054 4.054 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.303 1.303 11 H -0.299 1.299 12 C 0.141 3.859 13 C 0.043 3.957 14 H 0.110 0.890 15 C 0.082 3.918 16 N -0.716 5.716 17 C 0.634 3.366 18 O -0.588 6.588 19 O -0.343 6.343 20 H 0.024 0.976 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.011 0.989 24 H 0.056 0.944 25 H 0.244 0.756 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 8.706 10.012 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.329 5.329 4 C -0.386 4.386 5 H 0.107 0.893 6 C -0.249 4.249 7 N -0.565 5.565 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.231 1.231 11 H -0.227 1.227 12 C 0.014 3.986 13 C -0.015 4.015 14 H 0.128 0.872 15 C -0.043 4.043 16 N -0.389 5.389 17 C 0.387 3.613 18 O -0.479 6.479 19 O -0.253 6.253 20 H 0.044 0.956 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.713 7.915 9.837 13.161 hybrid contribution 0.367 -0.165 -0.729 0.833 sum 4.080 7.750 9.108 12.636 Atomic orbital electron populations 1.21975 0.98582 0.99225 0.98896 1.20639 0.92691 0.85079 0.97261 1.44283 1.75589 1.10594 1.02416 1.19640 1.31776 1.02930 0.84223 0.89278 1.25394 0.99045 1.00595 0.99864 1.70371 1.28829 1.32515 1.24798 0.85445 0.79329 0.76858 0.80232 1.18808 1.23077 1.22681 1.21294 0.91905 0.97927 0.87444 1.25199 1.03114 0.76059 0.97080 0.87169 1.23071 1.05908 0.91558 0.83722 1.45853 1.74197 1.05176 1.13720 1.18989 0.75949 0.85081 0.81301 1.90968 1.57490 1.37396 1.62019 1.87392 1.82558 1.33414 1.21898 0.95648 0.92737 0.95108 0.97078 0.92578 0.94668 0.88608 0.93038 0.85689 0.86066 0.71015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 9.61 71.98 0.69 -5.25 16 2 C 0.17 8.38 5.58 86.38 0.48 8.86 16 3 N -0.61 -28.13 2.54 -702.02 -1.78 -29.91 16 4 C -0.26 -12.82 9.70 84.03 0.82 -12.00 16 5 H 0.09 4.11 7.95 -2.91 -0.02 4.09 16 6 C -0.05 -2.87 4.90 84.86 0.42 -2.46 16 7 N -0.92 -51.75 8.79 21.65 0.19 -51.56 16 8 Si 0.95 43.31 29.62 68.60 2.03 45.35 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 11 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 12 C 0.14 4.79 5.23 86.38 0.45 5.24 16 13 C 0.04 1.26 4.10 30.96 0.13 1.39 16 14 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 15 C 0.08 1.37 7.71 86.63 0.67 2.04 16 16 N -0.72 -15.34 6.40 -590.44 -3.78 -19.12 16 17 C 0.63 21.91 9.16 129.91 1.19 23.10 16 18 O -0.59 -25.15 18.04 19.64 0.35 -24.80 16 19 O -0.34 -13.09 10.25 -47.28 -0.48 -13.57 16 20 H 0.02 1.04 8.14 -2.38 -0.02 1.03 16 21 H 0.05 2.85 6.71 -2.38 -0.02 2.83 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.01 0.54 7.56 -2.39 -0.02 0.52 16 24 H 0.06 3.17 5.76 -2.39 -0.01 3.16 16 25 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 26 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 27 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 28 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 1.42 7.73 -2.39 -0.02 1.40 16 30 H 0.45 6.73 8.96 -92.70 -0.83 5.89 16 Total: -1.00 -69.52 254.63 1.69 -67.83 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.31 Total: 4.87 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 4.84 Total: 20.92 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.37 Total: -100.59 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.13 Total: -38.37 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.52 1.69 -67.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.390 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds