Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46495 * 109.46844 * 2 1 4 4 C 1.36947 * 119.99584 * 84.48216 * 3 2 1 5 5 H 1.07997 * 119.99775 * 167.82816 * 4 3 2 6 6 C 1.38804 * 120.00047 * 347.83049 * 4 3 2 7 7 N 1.31620 * 120.00259 * 9.48370 * 6 4 3 8 8 Si 1.86805 * 120.00165 * 189.49063 * 6 4 3 9 9 H 1.48503 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47321 * 119.99356 * 8 6 4 11 11 H 1.48500 * 109.46958 * 239.99865 * 8 6 4 12 12 C 1.46498 * 120.00517 * 264.75039 * 3 2 1 13 13 C 1.52997 * 109.47158 * 264.31558 * 12 3 2 14 14 H 1.08991 * 110.46782 * 307.90036 * 13 12 3 15 15 C 1.54094 * 110.51832 * 185.27009 * 13 12 3 16 16 N 1.47093 * 103.77533 * 241.36708 * 15 13 12 17 17 C 1.34002 * 108.88318 * 0.02562 * 16 15 13 18 18 O 1.21510 * 123.07086 * 180.02562 * 17 16 15 19 19 O 1.34061 * 113.90092 * 359.91556 * 17 16 15 20 20 H 1.09002 * 109.46958 * 186.76362 * 1 2 3 21 21 H 1.08997 * 109.46959 * 306.75881 * 1 2 3 22 22 H 1.08994 * 109.47364 * 66.76023 * 1 2 3 23 23 H 1.09001 * 109.46901 * 240.00445 * 2 1 3 24 24 H 1.08994 * 109.47057 * 120.00767 * 2 1 3 25 25 H 0.96999 * 120.00307 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46943 * 24.31765 * 12 3 2 27 27 H 1.09004 * 109.47321 * 144.31054 * 12 3 2 28 28 H 1.08999 * 110.56844 * 359.94110 * 15 13 12 29 29 H 1.09004 * 110.56305 * 122.79847 * 15 13 12 30 30 H 0.97003 * 125.55989 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1390 2.0647 1.1806 5 1 2.6770 3.0007 1.2100 6 6 1.5699 1.5545 2.3392 7 7 1.0786 0.3335 2.3487 8 14 1.5011 2.6009 3.8852 9 1 2.1164 3.9250 3.6143 10 1 0.0858 2.7868 4.2945 11 1 2.2468 1.9226 4.9756 12 6 2.3719 2.0332 -1.2633 13 6 3.8777 1.9027 -1.5006 14 1 4.4324 2.2484 -0.6285 15 6 4.2972 2.6924 -2.7556 16 7 4.8428 1.6616 -3.6520 17 6 4.7630 0.4708 -3.0428 18 8 5.1438 -0.5630 -3.5553 19 8 4.2269 0.5235 -1.8151 20 1 -0.3633 -1.0205 0.1210 21 1 -0.3633 0.6150 0.8233 22 1 -0.3634 0.4055 -0.9442 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.6806 -0.0229 3.1583 26 1 1.8324 1.5565 -2.0817 27 1 2.1017 3.0882 -1.2159 28 1 3.4328 3.1765 -3.2100 29 1 5.0626 3.4277 -2.5071 30 1 5.2011 1.8183 -4.5397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685969228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = -38.747310 kcal Electronic energy + Delta-G solvation = -14920.092623 eV Core-core repulsion = 12331.121820 eV Total energy + Delta-G solvation = -2588.970803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07676 -37.08245 -35.79454 -34.37652 -31.84261 -30.09911 -28.47872 -25.42419 -23.34055 -22.26413 -21.65346 -20.17469 -17.81600 -16.77089 -16.48430 -15.97491 -15.13779 -14.41678 -14.08592 -13.70974 -13.34601 -13.07727 -13.04360 -12.27186 -11.63380 -11.55914 -11.17649 -10.94385 -10.67422 -10.51652 -10.35598 -10.18256 -9.92896 -9.67686 -9.43045 -9.19400 -8.36688 -6.87459 -5.62811 -3.17688 3.05310 3.07854 3.35660 3.41712 3.44398 3.95817 4.37281 4.55781 4.99039 5.19143 5.38003 5.49040 5.58215 5.85739 5.95001 6.27923 6.46410 6.72708 6.93367 7.05882 7.16238 7.29423 7.62307 7.68100 7.97743 8.10492 8.37936 8.50944 9.25583 9.84540 10.27840 11.26618 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.008846 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.577327 B = 3164.391651 C = 3464.743950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 N -0.595 5.595 4 C -0.251 4.251 5 H 0.074 0.926 6 C -0.003 4.003 7 N -0.900 5.900 8 Si 0.907 3.093 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.146 3.854 13 C 0.044 3.956 14 H 0.112 0.888 15 C 0.069 3.931 16 N -0.742 5.742 17 C 0.639 3.361 18 O -0.541 6.541 19 O -0.307 6.307 20 H 0.022 0.978 21 H 0.075 0.925 22 H 0.000 1.000 23 H 0.003 0.997 24 H 0.109 0.891 25 H 0.250 0.750 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 6.650 -8.209 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 N -0.315 5.315 4 C -0.380 4.380 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.547 5.547 8 Si 0.738 3.262 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.016 3.984 13 C -0.016 4.016 14 H 0.130 0.870 15 C -0.056 4.056 16 N -0.415 5.415 17 C 0.393 3.607 18 O -0.428 6.428 19 O -0.215 6.215 20 H 0.041 0.959 21 H 0.094 0.906 22 H 0.019 0.981 23 H 0.021 0.979 24 H 0.127 0.873 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.672 5.790 -7.916 10.473 hybrid contribution 0.079 0.849 0.380 0.933 sum 3.750 6.639 -7.537 10.721 Atomic orbital electron populations 1.22286 0.99617 0.98938 0.98423 1.21154 0.92016 0.83834 0.99287 1.44151 1.75179 1.11600 1.00563 1.19306 1.28893 1.03612 0.86226 0.90802 1.24886 0.99841 0.96854 0.98341 1.70195 1.44106 1.13805 1.26553 0.86136 0.77331 0.79547 0.83213 1.20576 1.21677 1.21873 1.21068 0.88775 0.98005 0.90551 1.25311 1.03393 0.76451 0.96396 0.86975 1.22904 0.99896 0.91956 0.90867 1.45975 1.67291 1.07673 1.20542 1.18895 0.76878 0.84311 0.80649 1.91007 1.53664 1.31715 1.66428 1.87524 1.73523 1.30780 1.29717 0.95858 0.90600 0.98144 0.97883 0.87325 0.93898 0.93010 0.91373 0.89233 0.89675 0.73059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.36 37.16 0.35 -2.84 16 2 C 0.16 4.03 5.66 -4.04 -0.02 4.01 16 3 N -0.59 -14.16 2.55 -173.24 -0.44 -14.61 16 4 C -0.25 -6.41 9.75 -15.06 -0.15 -6.56 16 5 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 6 C 0.00 -0.07 5.10 -17.43 -0.09 -0.16 16 7 N -0.90 -24.73 7.59 55.49 0.42 -24.31 16 8 Si 0.91 20.93 29.56 -169.99 -5.03 15.91 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.15 2.68 5.19 -4.04 -0.02 2.66 16 13 C 0.04 0.71 4.07 -26.16 -0.11 0.60 16 14 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 15 C 0.07 0.77 7.71 -3.15 -0.02 0.74 16 16 N -0.74 -9.40 6.40 -64.65 -0.41 -9.81 16 17 C 0.64 11.67 9.16 53.71 0.49 12.16 16 18 O -0.54 -11.73 18.04 -19.10 -0.34 -12.07 16 19 O -0.31 -6.13 10.80 -38.57 -0.42 -6.54 16 20 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.08 2.00 6.24 -51.93 -0.32 1.68 16 22 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 23 H 0.00 0.07 8.02 -51.93 -0.42 -0.35 16 24 H 0.11 3.06 5.77 -51.93 -0.30 2.76 16 25 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 27 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.43 4.12 8.96 -40.82 -0.37 3.76 16 LS Contribution 253.83 15.07 3.83 3.83 Total: -1.00 -31.24 253.83 -5.85 -37.09 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.88 Total: -0.10 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 0.43 Total: 10.62 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.43 Total: -48.73 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.76 Total: -18.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.24 -5.85 -37.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.658 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds