Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46495 * 109.46844 * 2 1 4 4 C 1.36947 * 119.99584 * 84.48216 * 3 2 1 5 5 H 1.07997 * 119.99775 * 167.82816 * 4 3 2 6 6 C 1.38804 * 120.00047 * 347.83049 * 4 3 2 7 7 N 1.31620 * 120.00259 * 9.48370 * 6 4 3 8 8 Si 1.86805 * 120.00165 * 189.49063 * 6 4 3 9 9 H 1.48503 * 109.46692 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47321 * 119.99356 * 8 6 4 11 11 H 1.48500 * 109.46958 * 239.99865 * 8 6 4 12 12 C 1.46498 * 120.00517 * 264.75039 * 3 2 1 13 13 C 1.52997 * 109.47158 * 264.31558 * 12 3 2 14 14 H 1.08991 * 110.46782 * 307.90036 * 13 12 3 15 15 C 1.54094 * 110.51832 * 185.27009 * 13 12 3 16 16 N 1.47093 * 103.77533 * 241.36708 * 15 13 12 17 17 C 1.34002 * 108.88318 * 0.02562 * 16 15 13 18 18 O 1.21510 * 123.07086 * 180.02562 * 17 16 15 19 19 O 1.34061 * 113.90092 * 359.91556 * 17 16 15 20 20 H 1.09002 * 109.46958 * 186.76362 * 1 2 3 21 21 H 1.08997 * 109.46959 * 306.75881 * 1 2 3 22 22 H 1.08994 * 109.47364 * 66.76023 * 1 2 3 23 23 H 1.09001 * 109.46901 * 240.00445 * 2 1 3 24 24 H 1.08994 * 109.47057 * 120.00767 * 2 1 3 25 25 H 0.96999 * 120.00307 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.46943 * 24.31765 * 12 3 2 27 27 H 1.09004 * 109.47321 * 144.31054 * 12 3 2 28 28 H 1.08999 * 110.56844 * 359.94110 * 15 13 12 29 29 H 1.09004 * 110.56305 * 122.79847 * 15 13 12 30 30 H 0.97003 * 125.55989 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1390 2.0647 1.1806 5 1 2.6770 3.0007 1.2100 6 6 1.5699 1.5545 2.3392 7 7 1.0786 0.3335 2.3487 8 14 1.5011 2.6009 3.8852 9 1 2.1164 3.9250 3.6143 10 1 0.0858 2.7868 4.2945 11 1 2.2468 1.9226 4.9756 12 6 2.3719 2.0332 -1.2633 13 6 3.8777 1.9027 -1.5006 14 1 4.4324 2.2484 -0.6285 15 6 4.2972 2.6924 -2.7556 16 7 4.8428 1.6616 -3.6520 17 6 4.7630 0.4708 -3.0428 18 8 5.1438 -0.5630 -3.5553 19 8 4.2269 0.5235 -1.8151 20 1 -0.3633 -1.0205 0.1210 21 1 -0.3633 0.6150 0.8233 22 1 -0.3634 0.4055 -0.9442 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.6806 -0.0229 3.1583 26 1 1.8324 1.5565 -2.0817 27 1 2.1017 3.0882 -1.2159 28 1 3.4328 3.1765 -3.2100 29 1 5.0626 3.4277 -2.5071 30 1 5.2011 1.8183 -4.5397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685969228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = -62.056585 kcal Electronic energy + Delta-G solvation = -14921.103389 eV Core-core repulsion = 12331.121820 eV Total energy + Delta-G solvation = -2589.981569 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.39569 -38.61345 -37.56376 -35.59260 -33.57698 -31.88468 -30.14288 -26.96162 -25.04321 -23.63604 -23.04819 -21.99540 -19.17918 -18.49019 -17.85244 -17.41375 -16.91012 -15.77990 -15.63347 -15.35296 -14.74022 -14.72158 -14.32618 -13.94068 -13.35446 -13.19163 -12.84162 -12.74430 -12.44113 -12.33429 -11.86932 -11.81458 -11.63386 -11.57469 -11.35129 -10.36698 -10.24695 -8.75932 -7.59858 -5.14458 1.52828 1.54801 1.63257 1.68722 1.90118 2.56456 2.77459 3.30277 3.40014 3.84927 4.01121 4.04839 4.50876 4.66374 4.71062 4.79088 4.93202 5.04719 5.13714 5.25096 5.34821 5.65922 5.88707 5.96690 6.12599 6.39103 6.51319 7.13141 7.27646 7.96376 8.37835 9.29487 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.008846 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.577327 B = 3164.391651 C = 3464.743950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.168 3.832 3 N -0.613 5.613 4 C -0.248 4.248 5 H 0.090 0.910 6 C -0.061 4.061 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.303 1.303 12 C 0.141 3.859 13 C 0.041 3.959 14 H 0.107 0.893 15 C 0.082 3.918 16 N -0.715 5.715 17 C 0.633 3.367 18 O -0.588 6.588 19 O -0.344 6.344 20 H 0.026 0.974 21 H 0.050 0.950 22 H 0.016 0.984 23 H 0.001 0.999 24 H 0.074 0.926 25 H 0.240 0.760 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 9.245 -9.462 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.043 3.957 3 N -0.334 5.334 4 C -0.378 4.378 5 H 0.108 0.892 6 C -0.254 4.254 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.226 1.226 11 H -0.231 1.231 12 C 0.014 3.986 13 C -0.017 4.017 14 H 0.125 0.875 15 C -0.042 4.042 16 N -0.388 5.388 17 C 0.386 3.614 18 O -0.478 6.478 19 O -0.254 6.254 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.019 0.981 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 4.228 8.468 -9.225 13.217 hybrid contribution -0.060 0.078 0.713 0.720 sum 4.168 8.546 -8.512 12.762 Atomic orbital electron populations 1.22082 0.98894 0.98717 0.98064 1.20856 0.92560 0.84901 0.97359 1.44309 1.75783 1.11162 1.02175 1.19708 1.27622 1.03666 0.86792 0.89230 1.25605 1.00758 0.97879 1.01182 1.70405 1.45565 1.15186 1.26515 0.85183 0.76480 0.78825 0.79791 1.18635 1.22587 1.23100 1.21347 0.90090 0.99055 0.88097 1.25215 1.01479 0.75910 0.99095 0.87487 1.23079 1.02349 0.90848 0.87914 1.45835 1.65772 1.06144 1.21091 1.19069 0.76790 0.85171 0.80370 1.90962 1.55718 1.33822 1.67304 1.87489 1.73874 1.33179 1.30847 0.95538 0.93111 0.96522 0.98069 0.90858 0.94933 0.92863 0.88492 0.85944 0.85719 0.70975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 9.36 71.99 0.67 -5.00 16 2 C 0.17 8.53 5.66 86.38 0.49 9.02 16 3 N -0.61 -28.64 2.55 -702.01 -1.79 -30.43 16 4 C -0.25 -12.39 9.75 84.03 0.82 -11.57 16 5 H 0.09 4.10 7.85 -2.91 -0.02 4.07 16 6 C -0.06 -3.22 5.10 84.86 0.43 -2.79 16 7 N -0.93 -52.28 7.59 21.65 0.16 -52.11 16 8 Si 0.97 43.10 29.56 68.60 2.03 45.12 16 9 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 10 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 C 0.14 4.82 5.19 86.38 0.45 5.27 16 13 C 0.04 1.22 4.07 30.96 0.13 1.34 16 14 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 15 C 0.08 1.41 7.71 86.64 0.67 2.08 16 16 N -0.71 -15.58 6.40 -590.01 -3.77 -19.36 16 17 C 0.63 22.30 9.16 129.91 1.19 23.49 16 18 O -0.59 -25.50 18.04 19.64 0.35 -25.14 16 19 O -0.34 -13.50 10.80 -50.03 -0.54 -14.04 16 20 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.05 2.70 6.24 -2.39 -0.01 2.68 16 22 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.00 0.05 8.02 -2.39 -0.02 0.03 16 24 H 0.07 4.27 5.77 -2.39 -0.01 4.26 16 25 H 0.24 13.40 8.31 -92.71 -0.77 12.62 16 26 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 27 H 0.10 2.76 8.08 -2.38 -0.02 2.74 16 28 H 0.12 1.44 7.73 -2.39 -0.02 1.42 16 29 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.45 6.84 8.96 -92.71 -0.83 6.01 16 Total: -1.00 -69.81 253.83 1.60 -68.20 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.31 Total: 5.92 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 4.85 Total: 21.84 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -5.40 Total: -101.90 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.19 Total: -39.18 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -69.81 1.60 -68.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685969228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.146 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds