Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54889 * 2 1 4 4 O 1.42907 * 109.46848 * 62.11362 * 3 2 1 5 5 Si 1.63105 * 113.99574 * 215.57866 * 4 3 2 6 6 C 1.86298 * 109.47128 * 65.00081 * 5 4 3 7 7 C 1.86298 * 109.47491 * 304.99462 * 5 4 3 8 8 C 1.86299 * 109.46683 * 184.99615 * 5 4 3 9 9 C 1.50704 * 109.47383 * 182.10979 * 3 2 1 10 10 N 1.27942 * 119.99965 * 85.56260 * 9 3 2 11 11 Si 1.86801 * 120.00113 * 265.56673 * 9 3 2 12 12 H 1.48504 * 109.47081 * 5.03625 * 11 9 3 13 13 H 1.48499 * 109.47030 * 125.03266 * 11 9 3 14 14 H 1.48493 * 109.47135 * 245.03447 * 11 9 3 15 15 C 1.53001 * 117.50202 * 145.67679 * 2 1 3 16 16 C 1.53001 * 117.50006 * 214.33781 * 2 1 3 17 17 H 1.09000 * 109.47319 * 59.99732 * 1 2 3 18 18 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47121 * 299.99515 * 1 2 3 20 20 H 1.09004 * 109.47832 * 302.11392 * 3 2 1 21 21 H 1.09004 * 109.46972 * 299.99509 * 6 5 4 22 22 H 1.08996 * 109.47398 * 59.99140 * 6 5 4 23 23 H 1.08994 * 109.47083 * 179.97438 * 6 5 4 24 24 H 1.08994 * 109.46944 * 175.16543 * 7 5 4 25 25 H 1.08996 * 109.47121 * 295.17235 * 7 5 4 26 26 H 1.09000 * 109.46633 * 55.16849 * 7 5 4 27 27 H 1.09001 * 109.47560 * 300.00370 * 8 5 4 28 28 H 1.09003 * 109.47575 * 60.00363 * 8 5 4 29 29 H 1.09000 * 109.47179 * 180.02562 * 8 5 4 30 30 H 0.96999 * 119.99935 * 5.25593 * 10 9 3 31 31 H 1.08997 * 117.49659 * 214.99794 * 15 2 1 32 32 H 1.08993 * 117.49549 * 0.02562 * 15 2 1 33 33 H 1.09000 * 117.49376 * 359.97165 * 16 2 1 34 34 H 1.09001 * 117.50222 * 144.96632 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 8 1.8267 2.0819 1.1909 5 14 1.6300 3.6874 0.9811 6 6 0.1824 3.9930 -0.1510 7 6 3.1726 4.4086 0.2255 8 6 1.3103 4.4943 2.6296 9 6 3.6875 1.2213 -0.0523 10 7 4.2775 1.0861 -1.1795 11 14 4.6826 1.2214 1.5286 12 1 3.7621 1.2695 2.6929 13 1 5.5031 -0.0144 1.5971 14 1 5.5736 2.4092 1.5526 15 6 2.2365 -1.1208 0.7652 16 6 2.2365 -1.1206 -0.7655 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8537 1.9439 -0.8704 21 1 0.3695 3.5209 -1.1155 22 1 -0.7201 3.5710 0.2911 23 1 0.0507 5.0659 -0.2908 24 1 3.0105 5.4639 0.0062 25 1 4.0020 4.3061 0.9251 26 1 3.4076 3.8777 -0.6970 27 1 0.4077 4.0724 3.0718 28 1 2.1572 4.3156 3.2921 29 1 1.1784 5.5672 2.4894 30 1 3.7718 1.1621 -2.0038 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2683 33 1 1.6112 -1.8581 -1.2687 34 1 3.1711 -0.8744 -1.2695 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687296971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -40.939728 kcal Electronic energy + Delta-G solvation = -13719.600760 eV Core-core repulsion = 11583.625938 eV Total energy + Delta-G solvation = -2135.974821 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63542 -37.03165 -35.79436 -29.76809 -29.62124 -28.75011 -28.51321 -27.64016 -23.56544 -22.36321 -20.17901 -18.16079 -17.54998 -17.11563 -15.90573 -15.21429 -14.46581 -14.36196 -14.22459 -13.98370 -13.87240 -13.51827 -13.40482 -13.31793 -13.18914 -13.11889 -12.86712 -12.72680 -12.62510 -12.55787 -11.96831 -11.75050 -11.39188 -11.02048 -10.94059 -10.70576 -10.67025 -9.96445 0.73656 1.20328 1.30030 1.74551 1.77572 1.81433 1.92679 2.00778 2.33425 2.79862 3.52245 3.65569 3.68974 3.91807 4.03815 4.30307 4.50307 4.59714 4.64883 4.65158 4.67461 4.68053 4.71579 4.72920 4.80133 4.86302 4.94859 4.99567 5.14368 5.22553 5.29418 5.40165 5.47703 5.54273 6.76631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C 0.134 3.866 4 O -0.604 6.604 5 Si 1.241 2.759 6 C -0.505 4.505 7 C -0.513 4.513 8 C -0.464 4.464 9 C -0.048 4.048 10 N -0.618 5.618 11 Si 1.043 2.957 12 H -0.226 1.226 13 H -0.248 1.248 14 H -0.248 1.248 15 C -0.160 4.160 16 C -0.180 4.180 17 H 0.058 0.942 18 H 0.061 0.939 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.325 0.675 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 0.296 0.489 1.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C 0.075 3.925 4 O -0.562 6.562 5 Si 1.378 2.622 6 C -0.607 4.607 7 C -0.615 4.615 8 C -0.571 4.571 9 C -0.293 4.293 10 N -0.231 5.231 11 Si 0.856 3.144 12 H -0.148 1.148 13 H -0.172 1.172 14 H -0.172 1.172 15 C -0.197 4.197 16 C -0.217 4.217 17 H 0.077 0.923 18 H 0.080 0.920 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.357 -0.113 1.062 1.126 hybrid contribution -1.457 0.671 -1.325 2.080 sum -1.814 0.558 -0.262 1.916 Atomic orbital electron populations 1.21270 0.90856 1.02315 1.02512 1.21405 0.95488 0.88884 1.06826 1.21170 0.92636 0.92454 0.86258 1.85456 1.86044 1.45459 1.39269 0.77448 0.65592 0.52847 0.66264 1.26930 1.16946 1.05283 1.11537 1.27084 1.18426 1.08246 1.07769 1.26266 1.05790 1.07574 1.17465 1.32492 0.97416 0.92460 1.06927 1.69476 1.43197 1.08776 1.01651 0.83834 0.77008 0.81762 0.71755 1.14803 1.17184 1.17187 1.23017 1.02152 1.00513 0.94024 1.23313 1.02612 1.00509 0.95308 0.92324 0.92029 0.91007 0.90972 0.91658 0.90768 0.90759 0.90436 0.90697 0.91622 0.90589 0.90586 0.90436 0.85730 0.88952 0.87877 0.87984 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.10 9.61 37.16 0.36 0.45 16 2 C -0.12 0.01 2.38 -154.51 -0.37 -0.36 16 3 C 0.13 -0.01 1.88 -27.88 -0.05 -0.06 16 4 O -0.60 0.02 6.59 -35.23 -0.23 -0.21 16 5 Si 1.24 -1.91 12.02 -169.99 -2.04 -3.95 16 6 C -0.50 0.60 8.64 101.05 0.87 1.47 16 7 C -0.51 0.33 7.95 101.05 0.80 1.14 16 8 C -0.46 0.55 8.65 101.05 0.87 1.42 16 9 C -0.05 -0.04 2.39 -13.90 -0.03 -0.07 16 10 N -0.62 -0.78 12.01 56.23 0.68 -0.11 16 11 Si 1.04 1.17 24.96 -169.99 -4.24 -3.07 16 12 H -0.23 -0.10 7.01 56.52 0.40 0.30 16 13 H -0.25 -0.38 7.11 56.52 0.40 0.03 16 14 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 15 C -0.16 -0.02 9.50 -26.69 -0.25 -0.27 16 16 C -0.18 0.03 9.54 -26.69 -0.25 -0.23 16 17 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 18 H 0.06 -0.08 8.11 -51.93 -0.42 -0.50 16 19 H 0.07 -0.05 8.12 -51.93 -0.42 -0.47 16 20 H 0.07 -0.11 6.37 -51.93 -0.33 -0.44 16 21 H 0.06 -0.08 7.37 -51.93 -0.38 -0.46 16 22 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 24 H 0.08 -0.09 7.96 -51.93 -0.41 -0.51 16 25 H 0.07 -0.03 7.56 -51.93 -0.39 -0.42 16 26 H 0.06 -0.02 7.36 -51.93 -0.38 -0.40 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 29 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.32 -0.06 8.65 -40.82 -0.35 -0.41 16 31 H 0.09 0.02 4.81 -51.93 -0.25 -0.23 16 32 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.10 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.10 0.04 5.98 -51.93 -0.31 -0.27 16 LS Contribution 273.89 15.07 4.13 4.13 Total: 0.00 -1.93 273.89 -5.56 -7.49 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -5.80 Total: -7.78 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 1.95 Total: 3.49 kcal Atomic # 7 Polarization: -0.78 SS G_CDS: 0.68 Total: -0.11 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -0.23 Total: -0.21 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: -6.29 Total: -7.02 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -1.93 -5.56 -7.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687296971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.446 kcal (2) G-P(sol) polarization free energy of solvation -1.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds