Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.54889 * 2 1 4 4 O 1.42907 * 109.46848 * 62.11362 * 3 2 1 5 5 Si 1.63105 * 113.99574 * 215.57866 * 4 3 2 6 6 C 1.86298 * 109.47128 * 65.00081 * 5 4 3 7 7 C 1.86298 * 109.47491 * 304.99462 * 5 4 3 8 8 C 1.86299 * 109.46683 * 184.99615 * 5 4 3 9 9 C 1.50704 * 109.47383 * 182.10979 * 3 2 1 10 10 N 1.27942 * 119.99965 * 85.56260 * 9 3 2 11 11 Si 1.86801 * 120.00113 * 265.56673 * 9 3 2 12 12 H 1.48504 * 109.47081 * 5.03625 * 11 9 3 13 13 H 1.48499 * 109.47030 * 125.03266 * 11 9 3 14 14 H 1.48493 * 109.47135 * 245.03447 * 11 9 3 15 15 C 1.53001 * 117.50202 * 145.67679 * 2 1 3 16 16 C 1.53001 * 117.50006 * 214.33781 * 2 1 3 17 17 H 1.09000 * 109.47319 * 59.99732 * 1 2 3 18 18 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.47121 * 299.99515 * 1 2 3 20 20 H 1.09004 * 109.47832 * 302.11392 * 3 2 1 21 21 H 1.09004 * 109.46972 * 299.99509 * 6 5 4 22 22 H 1.08996 * 109.47398 * 59.99140 * 6 5 4 23 23 H 1.08994 * 109.47083 * 179.97438 * 6 5 4 24 24 H 1.08994 * 109.46944 * 175.16543 * 7 5 4 25 25 H 1.08996 * 109.47121 * 295.17235 * 7 5 4 26 26 H 1.09000 * 109.46633 * 55.16849 * 7 5 4 27 27 H 1.09001 * 109.47560 * 300.00370 * 8 5 4 28 28 H 1.09003 * 109.47575 * 60.00363 * 8 5 4 29 29 H 1.09000 * 109.47179 * 180.02562 * 8 5 4 30 30 H 0.96999 * 119.99935 * 5.25593 * 10 9 3 31 31 H 1.08997 * 117.49659 * 214.99794 * 15 2 1 32 32 H 1.08993 * 117.49549 * 0.02562 * 15 2 1 33 33 H 1.09000 * 117.49376 * 359.97165 * 16 2 1 34 34 H 1.09001 * 117.50222 * 144.96632 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 8 1.8267 2.0819 1.1909 5 14 1.6300 3.6874 0.9811 6 6 0.1824 3.9930 -0.1510 7 6 3.1726 4.4086 0.2255 8 6 1.3103 4.4943 2.6296 9 6 3.6875 1.2213 -0.0523 10 7 4.2775 1.0861 -1.1795 11 14 4.6826 1.2214 1.5286 12 1 3.7621 1.2695 2.6929 13 1 5.5031 -0.0144 1.5971 14 1 5.5736 2.4092 1.5526 15 6 2.2365 -1.1208 0.7652 16 6 2.2365 -1.1206 -0.7655 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8537 1.9439 -0.8704 21 1 0.3695 3.5209 -1.1155 22 1 -0.7201 3.5710 0.2911 23 1 0.0507 5.0659 -0.2908 24 1 3.0105 5.4639 0.0062 25 1 4.0020 4.3061 0.9251 26 1 3.4076 3.8777 -0.6970 27 1 0.4077 4.0724 3.0718 28 1 2.1572 4.3156 3.2921 29 1 1.1784 5.5672 2.4894 30 1 3.7718 1.1621 -2.0038 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2683 33 1 1.6112 -1.8581 -1.2687 34 1 3.1711 -0.8744 -1.2695 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687296971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = -30.144156 kcal Electronic energy + Delta-G solvation = -13719.132629 eV Core-core repulsion = 11583.625938 eV Total energy + Delta-G solvation = -2135.506690 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.60989 -36.99222 -35.83235 -29.69143 -29.52659 -28.67155 -28.40863 -27.60098 -23.54353 -22.38894 -20.14966 -18.11484 -17.55451 -17.09673 -15.97682 -15.16552 -14.39279 -14.28287 -14.16041 -13.93337 -13.79560 -13.45419 -13.33035 -13.21295 -13.11216 -13.06696 -12.83827 -12.70275 -12.62270 -12.55241 -11.97971 -11.77018 -11.41468 -11.00026 -10.87107 -10.65233 -10.60351 -9.97381 0.68029 1.13913 1.37910 1.65538 1.72606 1.87183 1.91446 2.05375 2.42003 2.83842 3.53707 3.69950 3.73654 3.95652 4.08852 4.35429 4.51933 4.67306 4.70989 4.73142 4.75190 4.78016 4.81869 4.82171 4.87562 4.95812 4.98355 5.06964 5.17830 5.29458 5.38138 5.48769 5.57634 5.64762 6.75927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.126 4.126 3 C 0.131 3.869 4 O -0.613 6.613 5 Si 1.271 2.729 6 C -0.509 4.509 7 C -0.524 4.524 8 C -0.474 4.474 9 C -0.045 4.045 10 N -0.632 5.632 11 Si 1.037 2.963 12 H -0.216 1.216 13 H -0.257 1.257 14 H -0.252 1.252 15 C -0.171 4.171 16 C -0.180 4.180 17 H 0.064 0.936 18 H 0.065 0.935 19 H 0.070 0.930 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.332 0.668 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 0.428 0.338 2.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.128 4.128 3 C 0.071 3.929 4 O -0.571 6.571 5 Si 1.407 2.593 6 C -0.611 4.611 7 C -0.625 4.625 8 C -0.580 4.580 9 C -0.291 4.291 10 N -0.246 5.246 11 Si 0.851 3.149 12 H -0.138 1.138 13 H -0.182 1.182 14 H -0.176 1.176 15 C -0.208 4.208 16 C -0.217 4.217 17 H 0.083 0.917 18 H 0.084 0.916 19 H 0.089 0.911 20 H 0.105 0.895 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.028 0.026 0.916 1.378 hybrid contribution -1.216 0.632 -1.270 1.869 sum -2.245 0.658 -0.354 2.366 Atomic orbital electron populations 1.21289 0.90185 1.02727 1.02754 1.21486 0.95984 0.88748 1.06561 1.21230 0.91965 0.92868 0.86834 1.85445 1.86019 1.46160 1.39487 0.76931 0.64725 0.51954 0.65658 1.26971 1.16992 1.05510 1.11659 1.27222 1.18930 1.08728 1.07617 1.26366 1.05739 1.08173 1.17756 1.32399 0.98005 0.92124 1.06541 1.69455 1.43807 1.09185 1.02121 0.83920 0.77188 0.81095 0.72722 1.13756 1.18193 1.17647 1.23108 1.02264 1.01087 0.94300 1.23320 1.02497 1.00774 0.95126 0.91723 0.91568 0.91109 0.89490 0.91519 0.90760 0.90510 0.89939 0.91186 0.91982 0.90584 0.90762 0.89793 0.84943 0.89446 0.87110 0.87180 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.27 9.61 71.98 0.69 0.96 16 2 C -0.13 0.05 2.38 -52.18 -0.12 -0.07 16 3 C 0.13 -0.04 1.88 29.85 0.06 0.02 16 4 O -0.61 0.19 6.59 -148.98 -0.98 -0.79 16 5 Si 1.27 -4.24 12.02 68.60 0.82 -3.42 16 6 C -0.51 1.54 8.64 113.37 0.98 2.52 16 7 C -0.52 0.63 7.95 113.37 0.90 1.53 16 8 C -0.47 1.21 8.65 113.37 0.98 2.19 16 9 C -0.05 -0.09 2.39 88.68 0.21 0.12 16 10 N -0.63 -1.85 12.01 24.11 0.29 -1.56 16 11 Si 1.04 3.08 24.96 68.60 1.71 4.79 16 12 H -0.22 -0.26 7.01 99.48 0.70 0.43 16 13 H -0.26 -1.11 7.11 99.48 0.71 -0.40 16 14 H -0.25 -0.88 7.11 99.48 0.71 -0.17 16 15 C -0.17 -0.06 9.50 30.62 0.29 0.24 16 16 C -0.18 0.06 9.54 30.62 0.29 0.36 16 17 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 18 H 0.07 -0.22 8.11 -2.39 -0.02 -0.24 16 19 H 0.07 -0.14 8.12 -2.39 -0.02 -0.16 16 20 H 0.09 -0.31 6.37 -2.39 -0.02 -0.32 16 21 H 0.07 -0.21 7.37 -2.38 -0.02 -0.23 16 22 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 23 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 24 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 25 H 0.07 -0.02 7.56 -2.39 -0.02 -0.03 16 26 H 0.06 -0.03 7.36 -2.39 -0.02 -0.05 16 27 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.33 -0.05 8.65 -92.71 -0.80 -0.85 16 31 H 0.09 0.10 4.81 -2.39 -0.01 0.09 16 32 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.09 0.09 5.98 -2.39 -0.01 0.08 16 Total: 0.00 -4.28 273.89 7.13 2.84 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: 1.00 Total: -4.04 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.28 Total: 7.86 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: 0.29 Total: -1.56 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: -0.98 Total: -0.79 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.54 Total: 1.37 kcal Total: -4.28 7.13 2.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687296971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.989 kcal (2) G-P(sol) polarization free energy of solvation -4.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds