Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09001 * 110.28679 * 330.69928 * 3 2 1 5 5 C 1.54378 * 110.32418 * 92.82412 * 3 2 1 6 6 N 1.48825 * 104.46794 * 95.06938 * 5 3 2 7 7 C 1.48564 * 104.23469 * 39.50119 * 6 5 3 8 8 C 1.54256 * 110.32483 * 208.57132 * 3 2 1 9 9 H 1.09004 * 110.32133 * 0.10017 * 8 3 2 10 10 C 1.50697 * 110.32519 * 122.20431 * 8 3 2 11 11 O 1.21287 * 120.00314 * 0.02562 * 10 8 3 12 12 N 1.34782 * 119.99811 * 180.02562 * 10 8 3 13 13 C 1.37097 * 119.99665 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00287 * 359.97438 * 13 12 10 15 15 C 1.38959 * 119.99748 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99724 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99910 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46960 * 90.00317 * 17 15 13 19 19 H 1.48496 * 109.46952 * 210.00088 * 17 15 13 20 20 H 1.48501 * 109.47464 * 330.00180 * 17 15 13 21 21 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 24 24 H 1.08996 * 110.41268 * 213.81885 * 5 3 2 25 25 H 1.08999 * 110.41433 * 336.26614 * 5 3 2 26 26 H 1.00897 * 111.01426 * 279.93169 * 6 5 3 27 27 H 1.09005 * 110.41017 * 201.71462 * 7 6 5 28 28 H 1.08995 * 110.51222 * 79.32071 * 7 6 5 29 29 H 0.97001 * 120.00016 * 359.97438 * 12 10 8 30 30 H 0.96998 * 119.99666 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3494 2.0133 -0.5004 5 6 2.2935 1.7663 1.4459 6 7 3.7180 1.4041 1.6793 7 6 4.3914 1.7238 0.3942 8 6 3.3887 1.2782 -0.6918 9 1 3.6212 0.2694 -1.0329 10 6 3.4114 2.2402 -1.8516 11 8 2.4256 2.8958 -2.1151 12 7 4.5272 2.3720 -2.5960 13 6 4.5480 3.2475 -3.6508 14 1 3.6702 3.8313 -3.8854 15 6 5.6983 3.3831 -4.4186 16 7 5.7180 4.2219 -5.4299 17 14 7.2162 2.3728 -4.0132 18 1 7.1696 1.0888 -4.7576 19 1 8.4329 3.1285 -4.4053 20 1 7.2530 2.0981 -2.5542 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 2.1549 2.8437 1.5356 25 1 1.6460 1.2392 2.1467 26 1 3.8105 0.4244 1.9020 27 1 5.3229 1.1649 0.3038 28 1 4.5825 2.7942 0.3190 29 1 5.3158 1.8479 -2.3850 30 1 6.5211 4.3168 -5.9657 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690126967.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -75.225067 kcal Electronic energy + Delta-G solvation = -14700.104005 eV Core-core repulsion = 12109.551408 eV Total energy + Delta-G solvation = -2590.552597 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74136 -37.68984 -35.96848 -34.08132 -31.76477 -29.80282 -28.36956 -26.31758 -24.85013 -22.04060 -21.05528 -19.20675 -18.27041 -17.18013 -16.18961 -15.54437 -15.29369 -14.89194 -14.41526 -14.25470 -13.62473 -13.05930 -12.94987 -12.54948 -12.12147 -11.86592 -11.68060 -11.32111 -11.29940 -11.11214 -10.65607 -10.47886 -10.02870 -9.79295 -9.64216 -8.80457 -8.34773 -8.24875 -6.36413 -3.88326 3.00497 3.04953 3.13149 3.63124 3.77042 4.06514 4.27786 4.72289 4.80139 5.11355 5.21153 5.25477 5.37679 5.46402 5.48711 5.66011 5.70476 5.88800 5.93872 6.02132 6.13058 6.18755 6.61199 7.31174 7.39829 7.50841 8.07894 8.51923 8.87715 9.36113 9.73405 10.76333 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042876 B = 0.008504 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.885484 B = 3291.753480 C = 3597.723217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.060 3.940 4 H 0.100 0.900 5 C 0.022 3.978 6 N -0.663 5.663 7 C 0.049 3.951 8 C -0.137 4.137 9 H 0.099 0.901 10 C 0.460 3.540 11 O -0.578 6.578 12 N -0.581 5.581 13 C -0.309 4.309 14 H 0.120 0.880 15 C 0.044 3.956 16 N -0.878 5.878 17 Si 0.878 3.122 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.268 1.268 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.337 0.663 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.372 0.628 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -8.435 11.683 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.001 3.999 4 H 0.118 0.882 5 C -0.108 4.108 6 N -0.289 5.289 7 C -0.081 4.081 8 C -0.161 4.161 9 H 0.117 0.883 10 C 0.245 3.755 11 O -0.462 6.462 12 N -0.218 5.218 13 C -0.437 4.437 14 H 0.138 0.862 15 C -0.160 4.160 16 N -0.517 5.517 17 Si 0.704 3.296 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.193 1.193 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.152 0.848 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.205 0.795 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.338 -7.441 11.717 14.276 hybrid contribution 0.777 -1.271 -0.578 1.598 sum -2.561 -8.712 11.139 14.371 Atomic orbital electron populations 1.22754 0.81265 1.02195 1.00204 1.87838 1.19644 1.28083 1.95006 1.23503 0.95166 0.85279 0.96000 0.88245 1.23552 0.90086 1.01876 0.95257 1.63373 1.09803 1.24990 1.30776 1.23045 0.96173 1.02755 0.86107 1.22554 0.95796 1.01082 0.96671 0.88315 1.19350 0.84384 0.86597 0.85137 1.90519 1.34412 1.49411 1.71861 1.42157 1.12173 1.38825 1.28647 1.19459 1.01923 1.17979 1.04386 0.86224 1.25051 0.97945 0.97091 0.95895 1.69620 1.29399 1.34987 1.17715 0.86683 0.83264 0.80794 0.78813 1.19528 1.20008 1.19292 0.94297 0.90024 0.93638 0.89340 0.90451 0.84785 0.90227 0.89322 0.79499 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.86 101.05 1.10 1.49 16 2 O -0.39 -5.96 10.31 -35.23 -0.36 -6.32 16 3 C 0.06 0.98 3.11 -25.35 -0.08 0.90 16 4 H 0.10 1.86 6.14 -51.93 -0.32 1.54 16 5 C 0.02 0.31 7.23 -2.03 -0.01 0.30 16 6 N -0.66 -9.11 7.63 -109.45 -0.84 -9.94 16 7 C 0.05 0.76 6.98 -2.18 -0.02 0.74 16 8 C -0.14 -2.42 3.26 -90.39 -0.29 -2.71 16 9 H 0.10 1.65 7.98 -51.93 -0.41 1.23 16 10 C 0.46 10.56 6.96 -10.98 -0.08 10.49 16 11 O -0.58 -15.48 14.83 5.55 0.08 -15.40 16 12 N -0.58 -13.89 5.07 -10.96 -0.06 -13.95 16 13 C -0.31 -8.72 10.16 -14.93 -0.15 -8.88 16 14 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 15 C 0.04 1.20 5.50 -17.46 -0.10 1.10 16 16 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 17 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 21 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 26 H 0.34 4.08 8.92 -39.29 -0.35 3.73 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.49 7.85 -51.93 -0.41 1.09 16 29 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 255.42 15.07 3.85 3.85 Total: -1.00 -31.62 255.42 -4.71 -36.33 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -3.81 Total: 12.16 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 0.37 Total: 3.42 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.12 Total: -48.62 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.28 Total: -21.72 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.62 -4.71 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126967.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.898 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds