Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09001 * 110.28679 * 330.69928 * 3 2 1 5 5 C 1.54378 * 110.32418 * 92.82412 * 3 2 1 6 6 N 1.48825 * 104.46794 * 95.06938 * 5 3 2 7 7 C 1.48564 * 104.23469 * 39.50119 * 6 5 3 8 8 C 1.54256 * 110.32483 * 208.57132 * 3 2 1 9 9 H 1.09004 * 110.32133 * 0.10017 * 8 3 2 10 10 C 1.50697 * 110.32519 * 122.20431 * 8 3 2 11 11 O 1.21287 * 120.00314 * 0.02562 * 10 8 3 12 12 N 1.34782 * 119.99811 * 180.02562 * 10 8 3 13 13 C 1.37097 * 119.99665 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00287 * 359.97438 * 13 12 10 15 15 C 1.38959 * 119.99748 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99724 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 119.99910 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46960 * 90.00317 * 17 15 13 19 19 H 1.48496 * 109.46952 * 210.00088 * 17 15 13 20 20 H 1.48501 * 109.47464 * 330.00180 * 17 15 13 21 21 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 24 24 H 1.08996 * 110.41268 * 213.81885 * 5 3 2 25 25 H 1.08999 * 110.41433 * 336.26614 * 5 3 2 26 26 H 1.00897 * 111.01426 * 279.93169 * 6 5 3 27 27 H 1.09005 * 110.41017 * 201.71462 * 7 6 5 28 28 H 1.08995 * 110.51222 * 79.32071 * 7 6 5 29 29 H 0.97001 * 120.00016 * 359.97438 * 12 10 8 30 30 H 0.96998 * 119.99666 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3494 2.0133 -0.5004 5 6 2.2935 1.7663 1.4459 6 7 3.7180 1.4041 1.6793 7 6 4.3914 1.7238 0.3942 8 6 3.3887 1.2782 -0.6918 9 1 3.6212 0.2694 -1.0329 10 6 3.4114 2.2402 -1.8516 11 8 2.4256 2.8958 -2.1151 12 7 4.5272 2.3720 -2.5960 13 6 4.5480 3.2475 -3.6508 14 1 3.6702 3.8313 -3.8854 15 6 5.6983 3.3831 -4.4186 16 7 5.7180 4.2219 -5.4299 17 14 7.2162 2.3728 -4.0132 18 1 7.1696 1.0888 -4.7576 19 1 8.4329 3.1285 -4.4053 20 1 7.2530 2.0981 -2.5542 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 2.1549 2.8437 1.5356 25 1 1.6460 1.2392 2.1467 26 1 3.8105 0.4244 1.9020 27 1 5.3229 1.1649 0.3038 28 1 4.5825 2.7942 0.3190 29 1 5.3158 1.8479 -2.3850 30 1 6.5211 4.3168 -5.9657 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690126967.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -102.610425 kcal Electronic energy + Delta-G solvation = -14701.291523 eV Core-core repulsion = 12109.551408 eV Total energy + Delta-G solvation = -2591.740115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24422 -39.28901 -37.16772 -36.12293 -33.84137 -31.21632 -29.55379 -27.41489 -26.77814 -23.37591 -22.47323 -21.11367 -20.07277 -18.55949 -17.58984 -17.07973 -16.73139 -16.44885 -15.86979 -15.60126 -15.21791 -14.78434 -14.40931 -14.39497 -13.61252 -13.14711 -12.94438 -12.88135 -12.53010 -12.43779 -12.33865 -12.00241 -11.78724 -11.58740 -10.94168 -10.57605 -10.32401 -9.63178 -8.46325 -6.08422 1.28739 1.32882 1.42911 1.82540 2.19801 2.45436 2.98696 3.09534 3.28457 3.48891 3.93944 4.00545 4.15742 4.34207 4.40860 4.48299 4.57715 4.67771 4.78980 4.85971 4.89088 4.93590 5.44792 5.49113 5.88063 6.16105 6.40383 6.50306 6.78929 7.30014 7.83213 8.70836 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042876 B = 0.008504 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.885484 B = 3291.753480 C = 3597.723217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.061 3.939 4 H 0.067 0.933 5 C 0.030 3.970 6 N -0.655 5.655 7 C 0.055 3.945 8 C -0.130 4.130 9 H 0.117 0.883 10 C 0.459 3.541 11 O -0.625 6.625 12 N -0.578 5.578 13 C -0.335 4.335 14 H 0.057 0.943 15 C -0.010 4.010 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.228 1.228 21 H 0.058 0.942 22 H 0.108 0.892 23 H 0.029 0.971 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.352 0.648 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.391 0.609 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -10.981 14.015 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.001 3.999 4 H 0.085 0.915 5 C -0.100 4.100 6 N -0.282 5.282 7 C -0.076 4.076 8 C -0.154 4.154 9 H 0.135 0.865 10 C 0.247 3.753 11 O -0.511 6.511 12 N -0.218 5.218 13 C -0.464 4.464 14 H 0.075 0.925 15 C -0.210 4.210 16 N -0.569 5.569 17 Si 0.780 3.220 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.152 1.152 21 H 0.077 0.923 22 H 0.126 0.874 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.169 0.831 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.667 -10.009 14.081 17.356 hybrid contribution 0.077 -0.430 -1.335 1.404 sum -1.590 -10.439 12.746 16.552 Atomic orbital electron populations 1.22973 0.79619 1.03998 1.00431 1.87802 1.21389 1.27087 1.95139 1.23395 0.93977 0.85322 0.97195 0.91507 1.23496 0.90766 1.01778 0.93952 1.63323 1.09249 1.26226 1.29392 1.23014 0.96809 1.02114 0.85615 1.22570 0.97822 0.99986 0.95002 0.86490 1.20434 0.83120 0.86194 0.85576 1.90503 1.36096 1.51283 1.73213 1.41954 1.13368 1.38583 1.27874 1.19040 1.00802 1.19487 1.07036 0.92511 1.26116 1.01831 0.98128 0.94877 1.69793 1.31052 1.36941 1.19088 0.85431 0.76906 0.78695 0.81017 1.18126 1.19606 1.15159 0.92343 0.87419 0.95229 0.90069 0.87916 0.83111 0.87096 0.91241 0.77366 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.86 113.37 1.23 1.81 16 2 O -0.39 -11.31 10.31 -148.98 -1.54 -12.84 16 3 C 0.06 1.92 3.11 31.49 0.10 2.02 16 4 H 0.07 2.57 6.14 -2.39 -0.01 2.55 16 5 C 0.03 0.77 7.23 86.40 0.62 1.39 16 6 N -0.65 -15.62 7.63 -500.20 -3.82 -19.44 16 7 C 0.06 1.51 6.98 86.45 0.60 2.11 16 8 C -0.13 -4.36 3.26 -10.65 -0.03 -4.40 16 9 H 0.12 3.53 7.98 -2.38 -0.02 3.52 16 10 C 0.46 21.37 6.96 87.66 0.61 21.98 16 11 O -0.62 -35.18 14.83 -3.05 -0.05 -35.22 16 12 N -0.58 -27.68 5.07 -306.98 -1.56 -29.24 16 13 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 14 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 16 N -0.93 -55.73 13.96 21.67 0.30 -55.43 16 17 Si 0.96 38.46 27.74 68.60 1.90 40.36 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 20 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.03 0.75 8.10 -2.38 -0.02 0.73 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.10 2.10 8.08 -2.39 -0.02 2.08 16 26 H 0.35 6.91 8.92 -89.70 -0.80 6.11 16 27 H 0.11 2.38 8.14 -2.38 -0.02 2.37 16 28 H 0.07 2.21 7.85 -2.39 -0.02 2.19 16 29 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 30 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -73.28 255.42 -0.53 -73.80 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.23 Total: 32.02 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.45 Total: 5.99 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -5.07 Total: -104.11 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.58 Total: -48.07 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.36 kcal Total: -73.28 -0.53 -73.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126967.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.807 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds