Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00209 * 2 1 4 4 H 1.09004 * 110.28834 * 29.30771 * 3 2 1 5 5 C 1.54374 * 110.32788 * 267.17791 * 3 2 1 6 6 N 1.48562 * 104.59680 * 217.15209 * 5 3 2 7 7 C 1.48565 * 104.22199 * 39.48119 * 6 5 3 8 8 C 1.54263 * 110.40902 * 151.48862 * 3 2 1 9 9 H 1.08996 * 110.32434 * 237.83970 * 8 3 2 10 10 C 1.50704 * 110.32343 * 0.04947 * 8 3 2 11 11 O 1.21285 * 120.00286 * 85.91683 * 10 8 3 12 12 N 1.34779 * 119.99895 * 265.92308 * 10 8 3 13 13 C 1.37090 * 120.00244 * 179.97438 * 12 10 8 14 14 H 1.08005 * 119.99885 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00215 * 179.97438 * 13 12 10 16 16 N 1.31404 * 119.99886 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00233 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46901 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47142 * 119.99663 * 17 15 13 20 20 H 1.48493 * 109.47138 * 240.00370 * 17 15 13 21 21 H 1.09005 * 109.46472 * 299.99630 * 1 2 3 22 22 H 1.08998 * 109.47310 * 59.98907 * 1 2 3 23 23 H 1.08996 * 109.47496 * 179.97438 * 1 2 3 24 24 H 1.09001 * 110.41225 * 335.92505 * 5 3 2 25 25 H 1.08995 * 110.41260 * 98.25185 * 5 3 2 26 26 H 1.00903 * 110.99706 * 279.92586 * 6 5 3 27 27 H 1.08994 * 110.40731 * 79.29740 * 7 6 5 28 28 H 1.09003 * 110.41117 * 201.62057 * 7 6 5 29 29 H 0.97009 * 119.99614 * 359.97438 * 12 10 8 30 30 H 0.97005 * 120.00289 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 2.0133 0.5005 5 6 2.2935 1.7663 -1.4458 6 7 3.5736 2.5149 -1.3562 7 6 4.3904 1.7277 -0.3968 8 6 3.3897 1.2800 0.6901 9 1 3.4060 1.9754 1.5293 10 6 3.7151 -0.1149 1.1585 11 8 4.2377 -0.9032 0.3991 12 7 3.4253 -0.4866 2.4212 13 6 3.7208 -1.7557 2.8471 14 1 4.1855 -2.4579 2.1707 15 6 3.4225 -2.1387 4.1490 16 7 2.8576 -1.2843 4.9722 17 14 3.8245 -3.8683 4.7292 18 1 4.4527 -4.6292 3.6193 19 1 4.7653 -3.7995 5.8761 20 1 2.5759 -4.5509 5.1534 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 2.4023 0.9050 -2.1050 25 1 1.4945 2.4171 -1.8008 26 1 3.4210 3.4527 -1.0166 27 1 4.8272 0.8604 -0.8918 28 1 5.1725 2.3506 0.0372 29 1 3.0076 0.1440 3.0286 30 1 2.6490 -1.5518 5.8810 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690126971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -76.187737 kcal Electronic energy + Delta-G solvation = -14884.251976 eV Core-core repulsion = 12293.657635 eV Total energy + Delta-G solvation = -2590.594341 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.53840 -37.25786 -35.96537 -33.80653 -31.18437 -29.59957 -28.24650 -25.98609 -24.88387 -21.87797 -21.26848 -18.77865 -17.76553 -17.02138 -16.23504 -15.31240 -15.15324 -14.50388 -14.29972 -13.88056 -13.30146 -13.09490 -12.86323 -12.52652 -11.82323 -11.64438 -11.35979 -11.12920 -11.07438 -10.80067 -10.46739 -10.29385 -10.14857 -9.51446 -9.42134 -8.59401 -8.19764 -7.87214 -6.34633 -3.73746 3.20057 3.30148 3.38163 3.88631 4.04323 4.24031 4.45729 4.85983 5.02115 5.17621 5.27407 5.42812 5.51171 5.55858 5.60068 5.73516 5.77820 5.95786 6.11607 6.16000 6.42136 6.51775 6.74380 7.44551 7.55387 7.62414 8.14738 8.70189 9.26343 9.64503 10.16726 10.83677 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042267 B = 0.008846 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.301652 B = 3164.491749 C = 3445.903895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.069 3.931 4 H 0.064 0.936 5 C 0.022 3.978 6 N -0.663 5.663 7 C 0.055 3.945 8 C -0.141 4.141 9 H 0.086 0.914 10 C 0.474 3.526 11 O -0.586 6.586 12 N -0.561 5.561 13 C -0.291 4.291 14 H 0.102 0.898 15 C 0.019 3.981 16 N -0.905 5.905 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.283 1.283 21 H 0.038 0.962 22 H 0.034 0.966 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.331 0.669 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.389 0.611 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 7.880 -6.247 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.008 3.992 4 H 0.082 0.918 5 C -0.109 4.109 6 N -0.289 5.289 7 C -0.074 4.074 8 C -0.165 4.165 9 H 0.104 0.896 10 C 0.259 3.741 11 O -0.471 6.471 12 N -0.195 5.195 13 C -0.421 4.421 14 H 0.120 0.880 15 C -0.181 4.181 16 N -0.547 5.547 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.145 0.855 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.222 0.778 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.436 6.901 -7.207 10.553 hybrid contribution -0.936 0.002 1.827 2.053 sum -4.372 6.902 -5.380 9.783 Atomic orbital electron populations 1.22754 0.81944 1.02728 0.99071 1.88209 1.18670 1.25674 1.94637 1.23444 0.93863 0.85797 0.96094 0.91820 1.23544 0.91536 0.99117 0.96661 1.63347 1.13158 1.04749 1.47676 1.23013 0.94897 0.98848 0.90659 1.22647 0.95482 0.98877 0.99464 0.89617 1.19090 0.84011 0.87936 0.83055 1.90482 1.48353 1.53671 1.54596 1.41818 1.53883 1.13621 1.10214 1.19750 1.36811 0.89361 0.96142 0.87988 1.25229 0.97315 0.99691 0.95905 1.69622 1.43011 1.35330 1.06782 0.85828 0.78002 0.82033 0.78657 1.19244 1.20854 1.20866 0.94291 0.94714 0.89742 0.89032 0.91065 0.85492 0.87855 0.90766 0.77776 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.86 101.05 1.10 1.57 16 2 O -0.35 -6.93 8.91 -35.23 -0.31 -7.24 16 3 C 0.07 1.13 3.50 -25.35 -0.09 1.04 16 4 H 0.06 0.89 7.83 -51.93 -0.41 0.49 16 5 C 0.02 0.31 7.21 -2.18 -0.02 0.30 16 6 N -0.66 -9.33 7.62 -109.66 -0.84 -10.17 16 7 C 0.06 0.92 6.96 -2.18 -0.02 0.91 16 8 C -0.14 -2.60 3.44 -90.39 -0.31 -2.92 16 9 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 10 C 0.47 11.67 5.62 -10.98 -0.06 11.61 16 11 O -0.59 -16.59 15.30 5.55 0.08 -16.51 16 12 N -0.56 -14.78 5.29 -10.96 -0.06 -14.83 16 13 C -0.29 -8.37 9.68 -14.94 -0.14 -8.51 16 14 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 15 C 0.02 0.53 5.50 -17.47 -0.10 0.44 16 16 N -0.91 -25.20 13.05 55.50 0.72 -24.48 16 17 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 22 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.33 3.75 8.92 -39.29 -0.35 3.40 16 27 H 0.10 2.05 6.89 -51.93 -0.36 1.70 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -32.61 257.71 -5.08 -37.69 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -3.90 Total: 10.66 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.36 Total: 4.43 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.17 Total: -49.48 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.23 Total: -23.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.61 -5.08 -37.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.503 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds