Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00209 * 2 1 4 4 H 1.09004 * 110.28834 * 29.30771 * 3 2 1 5 5 C 1.54374 * 110.32788 * 267.17791 * 3 2 1 6 6 N 1.48562 * 104.59680 * 217.15209 * 5 3 2 7 7 C 1.48565 * 104.22199 * 39.48119 * 6 5 3 8 8 C 1.54263 * 110.40902 * 151.48862 * 3 2 1 9 9 H 1.08996 * 110.32434 * 237.83970 * 8 3 2 10 10 C 1.50704 * 110.32343 * 0.04947 * 8 3 2 11 11 O 1.21285 * 120.00286 * 85.91683 * 10 8 3 12 12 N 1.34779 * 119.99895 * 265.92308 * 10 8 3 13 13 C 1.37090 * 120.00244 * 179.97438 * 12 10 8 14 14 H 1.08005 * 119.99885 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00215 * 179.97438 * 13 12 10 16 16 N 1.31404 * 119.99886 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00233 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46901 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47142 * 119.99663 * 17 15 13 20 20 H 1.48493 * 109.47138 * 240.00370 * 17 15 13 21 21 H 1.09005 * 109.46472 * 299.99630 * 1 2 3 22 22 H 1.08998 * 109.47310 * 59.98907 * 1 2 3 23 23 H 1.08996 * 109.47496 * 179.97438 * 1 2 3 24 24 H 1.09001 * 110.41225 * 335.92505 * 5 3 2 25 25 H 1.08995 * 110.41260 * 98.25185 * 5 3 2 26 26 H 1.00903 * 110.99706 * 279.92586 * 6 5 3 27 27 H 1.08994 * 110.40731 * 79.29740 * 7 6 5 28 28 H 1.09003 * 110.41117 * 201.62057 * 7 6 5 29 29 H 0.97009 * 119.99614 * 359.97438 * 12 10 8 30 30 H 0.97005 * 120.00289 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 2.0133 0.5005 5 6 2.2935 1.7663 -1.4458 6 7 3.5736 2.5149 -1.3562 7 6 4.3904 1.7277 -0.3968 8 6 3.3897 1.2800 0.6901 9 1 3.4060 1.9754 1.5293 10 6 3.7151 -0.1149 1.1585 11 8 4.2377 -0.9032 0.3991 12 7 3.4253 -0.4866 2.4212 13 6 3.7208 -1.7557 2.8471 14 1 4.1855 -2.4579 2.1707 15 6 3.4225 -2.1387 4.1490 16 7 2.8576 -1.2843 4.9722 17 14 3.8245 -3.8683 4.7292 18 1 4.4527 -4.6292 3.6193 19 1 4.7653 -3.7995 5.8761 20 1 2.5759 -4.5509 5.1534 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 2.4023 0.9050 -2.1050 25 1 1.4945 2.4171 -1.8008 26 1 3.4210 3.4527 -1.0166 27 1 4.8272 0.8604 -0.8918 28 1 5.1725 2.3506 0.0372 29 1 3.0076 0.1440 3.0286 30 1 2.6490 -1.5518 5.8810 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690126971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -103.754319 kcal Electronic energy + Delta-G solvation = -14885.447353 eV Core-core repulsion = 12293.657635 eV Total energy + Delta-G solvation = -2591.789718 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05830 -39.00911 -37.29764 -35.89851 -33.26676 -31.06133 -29.47705 -27.25889 -26.85686 -23.30197 -22.71504 -20.57127 -19.77833 -18.43816 -17.69870 -17.00854 -16.52564 -16.21239 -15.85202 -15.63367 -14.87664 -14.63916 -14.45494 -14.00506 -13.57693 -13.03668 -12.96491 -12.74935 -12.42333 -12.35346 -12.20582 -12.12022 -11.73313 -11.48615 -10.76257 -10.34230 -9.98349 -9.64390 -8.45570 -5.93005 1.35227 1.39571 1.54281 2.06605 2.29938 2.75497 3.18298 3.24267 3.30789 3.76797 3.93036 4.02771 4.21777 4.33844 4.41792 4.51832 4.56879 4.61260 4.81583 4.88576 4.98042 5.13848 5.41373 5.49440 6.01007 6.33794 6.48985 6.62015 7.15094 7.59585 8.16363 8.72424 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042267 B = 0.008846 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.301652 B = 3164.491749 C = 3445.903895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.066 3.934 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.655 5.655 7 C 0.061 3.939 8 C -0.140 4.140 9 H 0.111 0.889 10 C 0.473 3.527 11 O -0.632 6.632 12 N -0.569 5.569 13 C -0.327 4.327 14 H 0.074 0.926 15 C -0.014 4.014 16 N -0.922 5.922 17 Si 0.991 3.009 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.271 1.271 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.353 0.647 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.392 0.608 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 9.327 -6.019 12.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.006 3.994 4 H 0.115 0.885 5 C -0.101 4.101 6 N -0.284 5.284 7 C -0.069 4.069 8 C -0.164 4.164 9 H 0.129 0.871 10 C 0.260 3.740 11 O -0.519 6.519 12 N -0.205 5.205 13 C -0.457 4.457 14 H 0.092 0.908 15 C -0.213 4.213 16 N -0.564 5.564 17 Si 0.815 3.185 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.196 1.196 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.130 0.870 26 H 0.170 0.830 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.226 0.774 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.366 8.393 -6.970 11.752 hybrid contribution -0.671 -0.417 1.719 1.892 sum -5.038 7.977 -5.252 10.797 Atomic orbital electron populations 1.22920 0.79873 1.03083 1.00996 1.88148 1.21229 1.27756 1.94998 1.23685 0.92860 0.85522 0.97348 0.88528 1.23501 0.92669 0.99032 0.94943 1.63224 1.12828 1.05559 1.46753 1.22846 0.95456 0.98291 0.90288 1.22775 0.97748 0.94899 1.00958 0.87089 1.20126 0.81963 0.90018 0.81884 1.90447 1.49927 1.55936 1.55566 1.41876 1.54506 1.13047 1.11045 1.19655 1.38854 0.90465 0.96731 0.90830 1.25998 0.96536 1.03457 0.95345 1.69675 1.42753 1.36771 1.07169 0.84906 0.78305 0.77292 0.78036 1.20022 1.19390 1.19576 0.93425 0.91540 0.90384 0.91708 0.87026 0.82968 0.91810 0.88390 0.77421 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.86 113.37 1.23 2.00 16 2 O -0.40 -15.54 8.91 -148.98 -1.33 -16.87 16 3 C 0.07 2.03 3.50 31.49 0.11 2.14 16 4 H 0.10 2.33 7.83 -2.39 -0.02 2.31 16 5 C 0.03 0.75 7.21 86.45 0.62 1.38 16 6 N -0.66 -16.64 7.62 -500.86 -3.82 -20.46 16 7 C 0.06 1.98 6.96 86.45 0.60 2.58 16 8 C -0.14 -5.03 3.44 -10.64 -0.04 -5.06 16 9 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 10 C 0.47 23.79 5.62 87.66 0.49 24.28 16 11 O -0.63 -37.32 15.30 -3.05 -0.05 -37.37 16 12 N -0.57 -30.68 5.29 -306.98 -1.62 -32.31 16 13 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 14 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.92 -50.95 13.05 21.66 0.28 -50.66 16 17 Si 0.99 44.31 29.55 68.60 2.03 46.33 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H 0.05 1.22 8.10 -2.38 -0.02 1.20 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.35 6.54 8.92 -89.69 -0.80 5.74 16 27 H 0.06 2.59 6.89 -2.39 -0.02 2.58 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.39 20.18 7.90 -92.70 -0.73 19.44 16 30 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -72.69 257.71 -0.58 -73.27 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.37 Total: 29.66 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.30 Total: 8.40 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -5.16 Total: -103.43 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -1.37 Total: -54.23 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.69 -0.58 -73.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.489 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds