Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00337 * 2 1 4 4 H 1.09002 * 110.90326 * 26.14532 * 3 2 1 5 5 C 1.55113 * 111.15366 * 262.24730 * 3 2 1 6 6 N 1.47840 * 104.90691 * 205.04947 * 5 3 2 7 7 C 1.47441 * 108.56892 * 23.97222 * 6 5 3 8 8 C 1.54314 * 107.23249 * 359.01088 * 7 6 5 9 9 H 1.09003 * 110.70996 * 96.27213 * 8 7 6 10 10 C 1.50706 * 110.70645 * 219.33592 * 8 7 6 11 11 O 1.21288 * 120.00224 * 115.91507 * 10 8 7 12 12 N 1.34777 * 119.99766 * 296.19048 * 10 8 7 13 13 C 1.37095 * 119.99970 * 179.97438 * 12 10 8 14 14 H 1.07999 * 119.99992 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00025 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99899 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 89.99595 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00115 * 17 15 13 20 20 H 1.48507 * 109.46904 * 329.99938 * 17 15 13 21 21 H 1.09009 * 109.46417 * 299.99557 * 1 2 3 22 22 H 1.09003 * 109.47478 * 59.99273 * 1 2 3 23 23 H 1.09001 * 109.47573 * 179.97438 * 1 2 3 24 24 H 1.09002 * 110.42233 * 86.13087 * 5 3 2 25 25 H 1.09002 * 110.30607 * 323.91261 * 5 3 2 26 26 H 1.00903 * 111.00218 * 146.24047 * 6 5 3 27 27 H 1.08999 * 109.88867 * 239.60602 * 7 6 5 28 28 H 1.09004 * 109.88754 * 118.41451 * 7 6 5 29 29 H 0.96999 * 120.00043 * 0.02562 * 12 10 8 30 30 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3334 2.0325 0.4487 5 6 2.4162 1.7373 -1.4334 6 7 3.4967 2.7277 -1.2404 7 6 4.1276 2.4850 0.0699 8 6 3.3823 1.3028 0.7242 9 1 3.9111 0.3667 0.5444 10 6 3.2051 1.5370 2.2023 11 8 2.0916 1.6564 2.6682 12 7 4.2841 1.6194 3.0057 13 6 4.1229 1.8330 4.3502 14 1 3.1313 1.9349 4.7658 15 6 5.2354 1.9184 5.1784 16 7 6.4420 1.7949 4.6727 17 14 5.0158 2.2087 7.0106 18 1 4.9052 0.9029 7.7090 19 1 6.1870 2.9544 7.5375 20 1 3.7805 2.9999 7.2418 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.5701 2.1940 -1.9470 25 1 2.7836 0.8798 -1.9971 26 1 4.1758 2.6717 -1.9846 27 1 4.0363 3.3729 0.6956 28 1 5.1789 2.2310 -0.0661 29 1 5.1747 1.5282 2.6324 30 1 7.2187 1.8542 5.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690126974.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -80.985621 kcal Electronic energy + Delta-G solvation = -14642.932416 eV Core-core repulsion = 12052.130023 eV Total energy + Delta-G solvation = -2590.802393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42985 -37.39105 -36.04609 -33.94386 -31.30822 -29.78458 -28.39402 -26.05042 -24.90043 -21.84455 -21.00099 -18.98267 -17.92874 -17.17188 -16.30898 -15.25610 -14.74515 -14.54127 -14.29826 -13.87841 -13.76043 -13.54921 -12.87676 -12.40348 -11.96911 -11.71485 -11.48502 -11.39593 -11.16562 -10.99671 -10.39723 -10.37291 -10.21101 -9.52533 -9.31018 -8.42475 -8.33438 -7.98246 -6.42508 -3.83350 3.17513 3.26377 3.32309 3.79916 3.92873 4.15929 4.49244 4.83155 4.88296 5.13050 5.29725 5.42959 5.51303 5.52616 5.63635 5.76361 5.89148 5.91295 5.99369 6.17447 6.34575 6.47122 6.85589 7.40617 7.50415 7.54636 8.04432 8.58992 9.16097 9.52769 10.03521 10.75103 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043640 B = 0.008009 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.463327 B = 3495.287328 C = 3950.343194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.103 3.897 4 H 0.091 0.909 5 C 0.025 3.975 6 N -0.679 5.679 7 C 0.058 3.942 8 C -0.123 4.123 9 H 0.095 0.905 10 C 0.454 3.546 11 O -0.592 6.592 12 N -0.558 5.558 13 C -0.301 4.301 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.900 5.900 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.049 0.951 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.339 0.661 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.393 0.607 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -0.938 -10.307 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.294 6.294 3 C 0.044 3.956 4 H 0.109 0.891 5 C -0.105 4.105 6 N -0.309 5.309 7 C -0.071 4.071 8 C -0.146 4.146 9 H 0.113 0.887 10 C 0.240 3.760 11 O -0.477 6.477 12 N -0.193 5.193 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.541 5.541 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.155 0.845 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.226 0.774 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.805 -0.488 -9.654 10.795 hybrid contribution 0.937 -0.610 0.504 1.227 sum -3.868 -1.098 -9.150 9.994 Atomic orbital electron populations 1.22744 0.81185 1.02205 1.00071 1.87826 1.19743 1.27137 1.94678 1.23012 0.94471 0.85343 0.92817 0.89146 1.23293 0.95537 0.93951 0.97734 1.61803 1.14097 1.50792 1.04181 1.22569 0.96645 0.97616 0.90313 1.22492 0.96759 0.99957 0.95385 0.88702 1.19440 0.85516 0.84359 0.86730 1.90497 1.24730 1.56363 1.76153 1.41856 1.07299 1.62353 1.07785 1.19726 0.94943 1.46049 0.82326 0.87905 1.25272 0.94593 0.97291 1.00705 1.69613 0.97808 1.50030 1.36694 0.85853 0.77934 0.78495 0.81984 1.20389 1.20873 1.19393 0.93279 0.94594 0.90103 0.90359 0.93118 0.84534 0.89651 0.91987 0.77391 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.68 10.52 -35.23 -0.37 -7.05 16 3 C 0.10 1.82 2.62 -24.48 -0.06 1.75 16 4 H 0.09 1.76 7.13 -51.93 -0.37 1.39 16 5 C 0.02 0.35 7.32 -2.19 -0.02 0.33 16 6 N -0.68 -9.61 7.39 -110.67 -0.82 -10.43 16 7 C 0.06 0.95 7.15 -2.84 -0.02 0.93 16 8 C -0.12 -2.35 3.06 -89.95 -0.28 -2.63 16 9 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 10 C 0.45 11.11 6.96 -10.98 -0.08 11.03 16 11 O -0.59 -16.46 15.30 5.55 0.08 -16.38 16 12 N -0.56 -14.41 5.26 -10.96 -0.06 -14.46 16 13 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 16 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 17 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H 0.05 0.75 8.12 -51.92 -0.42 0.33 16 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.34 3.87 8.91 -39.29 -0.35 3.52 16 27 H 0.09 1.57 7.81 -51.93 -0.41 1.16 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -31.40 259.73 -5.06 -36.46 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.92 Total: 10.78 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 0.40 Total: 4.89 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.15 Total: -48.77 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.29 Total: -23.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.40 -5.06 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126974.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.523 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds