Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00337 * 2 1 4 4 H 1.09002 * 110.90326 * 26.14532 * 3 2 1 5 5 C 1.55113 * 111.15366 * 262.24730 * 3 2 1 6 6 N 1.47840 * 104.90691 * 205.04947 * 5 3 2 7 7 C 1.47441 * 108.56892 * 23.97222 * 6 5 3 8 8 C 1.54314 * 107.23249 * 359.01088 * 7 6 5 9 9 H 1.09003 * 110.70996 * 96.27213 * 8 7 6 10 10 C 1.50706 * 110.70645 * 219.33592 * 8 7 6 11 11 O 1.21288 * 120.00224 * 115.91507 * 10 8 7 12 12 N 1.34777 * 119.99766 * 296.19048 * 10 8 7 13 13 C 1.37095 * 119.99970 * 179.97438 * 12 10 8 14 14 H 1.07999 * 119.99992 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00025 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99899 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00157 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 89.99595 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00115 * 17 15 13 20 20 H 1.48507 * 109.46904 * 329.99938 * 17 15 13 21 21 H 1.09009 * 109.46417 * 299.99557 * 1 2 3 22 22 H 1.09003 * 109.47478 * 59.99273 * 1 2 3 23 23 H 1.09001 * 109.47573 * 179.97438 * 1 2 3 24 24 H 1.09002 * 110.42233 * 86.13087 * 5 3 2 25 25 H 1.09002 * 110.30607 * 323.91261 * 5 3 2 26 26 H 1.00903 * 111.00218 * 146.24047 * 6 5 3 27 27 H 1.08999 * 109.88867 * 239.60602 * 7 6 5 28 28 H 1.09004 * 109.88754 * 118.41451 * 7 6 5 29 29 H 0.96999 * 120.00043 * 0.02562 * 12 10 8 30 30 H 0.97005 * 120.00019 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3334 2.0325 0.4487 5 6 2.4162 1.7373 -1.4334 6 7 3.4967 2.7277 -1.2404 7 6 4.1276 2.4850 0.0699 8 6 3.3823 1.3028 0.7242 9 1 3.9111 0.3667 0.5444 10 6 3.2051 1.5370 2.2023 11 8 2.0916 1.6564 2.6682 12 7 4.2841 1.6194 3.0057 13 6 4.1229 1.8330 4.3502 14 1 3.1313 1.9349 4.7658 15 6 5.2354 1.9184 5.1784 16 7 6.4420 1.7949 4.6727 17 14 5.0158 2.2087 7.0106 18 1 4.9052 0.9029 7.7090 19 1 6.1870 2.9544 7.5375 20 1 3.7805 2.9999 7.2418 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.5701 2.1940 -1.9470 25 1 2.7836 0.8798 -1.9971 26 1 4.1758 2.6717 -1.9846 27 1 4.0363 3.3729 0.6956 28 1 5.1789 2.2310 -0.0661 29 1 5.1747 1.5282 2.6324 30 1 7.2187 1.8542 5.2509 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690126974.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -107.105195 kcal Electronic energy + Delta-G solvation = -14644.065046 eV Core-core repulsion = 12052.130023 eV Total energy + Delta-G solvation = -2591.935023 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01136 -39.09159 -37.35087 -36.02477 -33.36021 -31.26669 -29.66457 -27.28095 -26.86874 -23.43047 -22.28471 -20.80154 -19.95582 -18.51535 -17.92195 -17.00499 -16.31293 -15.97517 -15.89575 -15.57184 -15.31236 -15.01834 -14.27836 -13.88523 -13.66394 -13.44392 -13.00739 -12.80201 -12.73448 -12.46819 -12.35381 -12.12876 -11.74408 -11.55464 -10.58713 -10.41491 -10.06704 -9.49558 -8.50225 -5.99720 1.35756 1.40247 1.53250 1.96201 2.27089 2.62950 3.00181 3.15736 3.45359 3.51240 3.76047 4.02149 4.22591 4.32492 4.48226 4.52071 4.56355 4.63029 4.81211 4.86501 4.89379 5.01375 5.37735 5.64558 5.94597 6.20941 6.45433 6.53166 7.06703 7.48748 8.03303 8.67076 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043640 B = 0.008009 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.463327 B = 3495.287328 C = 3950.343194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.100 3.900 4 H 0.063 0.937 5 C 0.038 3.962 6 N -0.677 5.677 7 C 0.068 3.932 8 C -0.121 4.121 9 H 0.106 0.894 10 C 0.449 3.551 11 O -0.633 6.633 12 N -0.564 5.564 13 C -0.339 4.339 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.917 5.917 17 Si 0.994 3.006 18 H -0.270 1.270 19 H -0.268 1.268 20 H -0.273 1.273 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.360 0.640 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.397 0.603 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -1.099 -11.416 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.041 3.959 4 H 0.081 0.919 5 C -0.091 4.091 6 N -0.310 5.310 7 C -0.062 4.062 8 C -0.144 4.144 9 H 0.124 0.876 10 C 0.237 3.763 11 O -0.520 6.520 12 N -0.199 5.199 13 C -0.468 4.468 14 H 0.096 0.904 15 C -0.210 4.210 16 N -0.557 5.557 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.192 1.192 20 H -0.198 1.198 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.178 0.822 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.231 0.769 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.237 -0.653 -10.800 11.620 hybrid contribution 0.728 -0.580 0.826 1.244 sum -3.509 -1.234 -9.974 10.645 Atomic orbital electron populations 1.22936 0.79479 1.03835 1.00375 1.87781 1.21658 1.27097 1.94910 1.23006 0.93082 0.84952 0.94896 0.91881 1.23234 0.96059 0.94630 0.95210 1.61737 1.14624 1.50916 1.03714 1.22385 0.97755 0.95173 0.90896 1.22499 0.98786 1.01602 0.91496 0.87559 1.20406 0.84497 0.82501 0.88937 1.90461 1.26212 1.57739 1.77622 1.41898 1.07863 1.62759 1.07389 1.19695 0.94494 1.48721 0.83905 0.90373 1.26069 0.94009 0.96170 1.04786 1.69668 0.98308 1.49456 1.38301 0.84917 0.78089 0.78646 0.76618 1.19581 1.19220 1.19779 0.95479 0.91771 0.87874 0.88458 0.91134 0.82216 0.92223 0.89596 0.76894 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.85 113.37 1.23 2.04 16 2 O -0.40 -13.71 10.52 -148.98 -1.57 -15.28 16 3 C 0.10 3.46 2.62 32.05 0.08 3.54 16 4 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 5 C 0.04 0.96 7.32 86.85 0.64 1.59 16 6 N -0.68 -17.38 7.39 -504.06 -3.73 -21.11 16 7 C 0.07 2.13 7.15 86.65 0.62 2.75 16 8 C -0.12 -4.59 3.06 -10.36 -0.03 -4.62 16 9 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 10 C 0.45 22.60 6.96 87.66 0.61 23.21 16 11 O -0.63 -36.69 15.30 -3.05 -0.05 -36.73 16 12 N -0.56 -29.87 5.26 -306.98 -1.61 -31.49 16 13 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 15 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 16 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 17 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H 0.03 0.84 8.12 -2.38 -0.02 0.82 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.36 6.89 8.91 -89.69 -0.80 6.09 16 27 H 0.06 2.19 7.81 -2.39 -0.02 2.17 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 30 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -68.57 259.73 -0.59 -69.16 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.37 Total: 30.00 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 4.43 Total: 9.60 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -5.06 Total: -102.02 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.61 Total: -52.01 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -68.57 -0.59 -69.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126974.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.945 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds