Wall clock time and date at job start Mon Mar 30 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99654 * 2 1 4 4 H 1.09001 * 110.29132 * 332.12501 * 3 2 1 5 5 C 1.54373 * 110.32573 * 94.36664 * 3 2 1 6 6 N 1.48562 * 104.59931 * 142.74553 * 5 3 2 7 7 C 1.48564 * 104.21780 * 320.51648 * 6 5 3 8 8 C 1.54269 * 110.31953 * 209.99815 * 3 2 1 9 9 H 1.09004 * 110.32035 * 122.20681 * 8 3 2 10 10 C 1.50704 * 110.32312 * 0.02562 * 8 3 2 11 11 O 1.21286 * 119.99619 * 274.06842 * 10 8 3 12 12 N 1.34771 * 119.99992 * 94.06747 * 10 8 3 13 13 C 1.37103 * 119.99919 * 179.97438 * 12 10 8 14 14 H 1.08005 * 119.99608 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99938 * 180.02562 * 13 12 10 16 16 N 1.31403 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99812 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47146 * 90.00176 * 17 15 13 19 19 H 1.48497 * 109.47111 * 210.00483 * 17 15 13 20 20 H 1.48508 * 109.47004 * 329.99951 * 17 15 13 21 21 H 1.09000 * 109.46908 * 299.99947 * 1 2 3 22 22 H 1.09002 * 109.47076 * 60.00409 * 1 2 3 23 23 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 24 24 H 1.09006 * 110.41053 * 261.52209 * 5 3 2 25 25 H 1.09002 * 110.41314 * 23.95881 * 5 3 2 26 26 H 1.00903 * 110.99787 * 80.07249 * 6 5 3 27 27 H 1.09000 * 110.41012 * 280.70026 * 7 6 5 28 28 H 1.08993 * 110.51039 * 158.31419 * 7 6 5 29 29 H 0.97002 * 120.00463 * 0.02562 * 12 10 8 30 30 H 0.97006 * 120.00197 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0184 -0.4780 5 6 2.3290 1.7505 1.4434 6 7 3.6078 2.4982 1.3309 7 6 4.3999 1.7200 0.3440 8 6 3.3727 1.2854 -0.7233 9 1 3.3700 1.9897 -1.5552 10 6 3.6840 -0.1049 -1.2146 11 8 4.2233 -0.9022 -0.4767 12 7 3.3631 -0.4622 -2.4739 13 6 3.6468 -1.7268 -2.9210 14 1 4.1270 -2.4368 -2.2639 15 6 3.3164 -2.0950 -4.2194 16 7 2.7326 -1.2310 -5.0190 17 14 3.7023 -3.8183 -4.8284 18 1 2.5506 -4.7123 -4.5467 19 1 3.9542 -3.7815 -6.2914 20 1 4.9091 -4.3311 -4.1311 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.5408 2.4005 1.8236 25 1 2.4519 0.8821 2.0906 26 1 3.4487 3.4398 1.0051 27 1 4.8470 0.8468 0.8191 28 1 5.1722 2.3452 -0.1040 29 1 2.9321 0.1756 -3.0641 30 1 2.5023 -1.4879 -5.9256 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690126977.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:27 Heat of formation + Delta-G solvation = -76.157236 kcal Electronic energy + Delta-G solvation = -14886.509059 eV Core-core repulsion = 12295.916041 eV Total energy + Delta-G solvation = -2590.593019 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.53643 -37.25271 -35.96592 -33.80552 -31.18426 -29.59505 -28.25040 -25.97739 -24.88277 -21.87723 -21.26800 -18.77661 -17.76460 -17.02056 -16.23139 -15.30989 -15.14868 -14.50352 -14.30284 -13.87922 -13.29907 -13.09131 -12.86217 -12.52219 -11.82062 -11.63893 -11.35604 -11.12708 -11.06317 -10.79827 -10.46553 -10.34443 -10.14261 -9.50861 -9.41093 -8.59278 -8.19675 -7.87203 -6.34531 -3.73743 3.21720 3.29748 3.36280 3.88781 4.04856 4.24023 4.45677 4.85946 5.02375 5.17937 5.27468 5.42889 5.51281 5.56016 5.60533 5.73870 5.78112 5.96303 6.11728 6.16142 6.42249 6.51897 6.74510 7.44681 7.55609 7.62234 8.14591 8.70256 9.26283 9.64521 10.16817 10.83715 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042308 B = 0.008854 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.661130 B = 3161.636301 C = 3442.980266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.069 3.931 4 H 0.064 0.936 5 C 0.022 3.978 6 N -0.663 5.663 7 C 0.055 3.945 8 C -0.142 4.142 9 H 0.085 0.915 10 C 0.474 3.526 11 O -0.587 6.587 12 N -0.560 5.560 13 C -0.292 4.292 14 H 0.102 0.898 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.928 3.072 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.270 1.270 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.331 0.669 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.389 0.611 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 7.821 6.364 10.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.008 3.992 4 H 0.082 0.918 5 C -0.108 4.108 6 N -0.289 5.289 7 C -0.074 4.074 8 C -0.165 4.165 9 H 0.104 0.896 10 C 0.259 3.741 11 O -0.471 6.471 12 N -0.195 5.195 13 C -0.421 4.421 14 H 0.120 0.880 15 C -0.181 4.181 16 N -0.548 5.548 17 Si 0.756 3.244 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.145 0.855 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.222 0.778 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.250 6.834 7.292 10.509 hybrid contribution -0.982 0.012 -1.800 2.051 sum -4.232 6.846 5.492 9.743 Atomic orbital electron populations 1.22758 0.81939 1.02732 0.99067 1.88211 1.18679 1.25674 1.94634 1.23455 0.93923 0.85822 0.96019 0.91782 1.23537 0.91439 0.99196 0.96611 1.63349 1.14239 1.04781 1.46559 1.23008 0.94968 0.99033 0.90411 1.22662 0.95640 0.98900 0.99342 0.89642 1.19086 0.84033 0.87973 0.82989 1.90481 1.47861 1.52928 1.55844 1.41810 1.53168 1.13730 1.10813 1.19701 1.36303 0.89578 0.96554 0.88046 1.25225 0.97244 0.99636 0.95998 1.69613 1.42131 1.35179 1.07837 0.85884 0.78962 0.81990 0.77609 1.20520 1.21024 1.19448 0.94725 0.94270 0.89748 0.91064 0.89006 0.85495 0.87860 0.90775 0.77777 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.35 -6.93 8.90 -35.23 -0.31 -7.25 16 3 C 0.07 1.13 3.51 -25.35 -0.09 1.04 16 4 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 5 C 0.02 0.32 7.21 -2.18 -0.02 0.31 16 6 N -0.66 -9.33 7.62 -109.66 -0.84 -10.17 16 7 C 0.06 0.92 6.96 -2.18 -0.02 0.91 16 8 C -0.14 -2.62 3.44 -90.39 -0.31 -2.93 16 9 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 10 C 0.47 11.68 5.61 -10.99 -0.06 11.62 16 11 O -0.59 -16.60 15.30 5.55 0.08 -16.51 16 12 N -0.56 -14.77 5.29 -10.96 -0.06 -14.83 16 13 C -0.29 -8.39 9.68 -14.93 -0.14 -8.54 16 14 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 15 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 16 N -0.91 -25.20 13.05 55.50 0.72 -24.47 16 17 Si 0.93 21.60 29.55 -169.99 -5.02 16.58 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.04 0.55 8.10 -51.93 -0.42 0.12 16 23 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 26 H 0.33 3.75 8.92 -39.29 -0.35 3.40 16 27 H 0.10 2.06 6.89 -51.93 -0.36 1.70 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 257.69 15.07 3.88 3.88 Total: -1.00 -32.57 257.69 -5.08 -37.65 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -3.90 Total: 10.70 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 0.36 Total: 4.42 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.17 Total: -49.48 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.23 Total: -23.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.57 -5.08 -37.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690126977.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.507 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds