Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.54963 * 2 1 4 4 C 1.53069 * 117.49430 * 214.26793 * 2 1 3 5 5 C 1.52993 * 59.98761 * 252.51675 * 4 2 1 6 6 H 1.09000 * 117.49971 * 107.50283 * 5 4 2 7 7 C 1.53005 * 117.50152 * 252.49977 * 5 4 2 8 8 O 1.42903 * 109.47148 * 128.74113 * 7 5 4 9 9 Si 1.63094 * 114.00019 * 210.00058 * 8 7 5 10 10 C 1.86301 * 109.47166 * 60.00477 * 9 8 7 11 11 C 1.86300 * 109.47396 * 300.00422 * 9 8 7 12 12 C 1.86299 * 109.47178 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47200 * 248.74954 * 7 5 4 14 14 N 1.27938 * 120.00494 * 130.00027 * 13 7 5 15 15 Si 1.86800 * 119.99520 * 309.99544 * 13 7 5 16 16 H 1.48492 * 109.47379 * 0.02562 * 15 13 7 17 17 H 1.48497 * 109.46927 * 120.00569 * 15 13 7 18 18 H 1.48504 * 109.47060 * 240.00037 * 15 13 7 19 19 H 1.08998 * 109.46883 * 274.32901 * 1 2 3 20 20 H 1.08999 * 109.46799 * 34.33092 * 1 2 3 21 21 H 1.08996 * 109.46833 * 154.32819 * 1 2 3 22 22 H 1.09003 * 117.51377 * 145.03650 * 4 2 1 23 23 H 1.08996 * 117.49299 * 0.02562 * 4 2 1 24 24 H 1.09007 * 109.46656 * 8.74407 * 7 5 4 25 25 H 1.09002 * 109.47148 * 59.99808 * 10 9 8 26 26 H 1.09001 * 109.46900 * 299.99961 * 10 9 8 27 27 H 1.09004 * 109.47198 * 179.97438 * 10 9 8 28 28 H 1.08996 * 109.47484 * 180.02562 * 11 9 8 29 29 H 1.09000 * 109.46936 * 300.00072 * 11 9 8 30 30 H 1.09001 * 109.47083 * 59.99786 * 11 9 8 31 31 H 1.09002 * 109.46890 * 300.00041 * 12 9 8 32 32 H 1.09000 * 109.47207 * 59.99895 * 12 9 8 33 33 H 1.08996 * 109.47367 * 179.97438 * 12 9 8 34 34 H 0.96993 * 120.00421 * 179.97438 * 14 13 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7645 5 6 2.2365 -1.1208 0.7654 6 1 1.6112 -1.8579 1.2693 7 6 3.5490 -0.7755 1.4718 8 8 3.3141 0.2502 2.4387 9 14 4.5953 1.2264 2.6949 10 6 5.0617 2.0702 1.1008 11 6 6.0349 0.2141 3.3060 12 6 4.1529 2.5095 3.9711 13 6 4.0862 -2.0028 2.1617 14 7 5.3040 -2.3538 1.9867 15 14 2.9738 -3.0119 3.2726 16 1 1.6215 -2.3995 3.3070 17 1 2.8760 -4.3977 2.7482 18 1 3.5397 -3.0409 4.6453 19 1 -0.3633 0.0776 1.0247 20 1 -0.3633 0.8486 -0.5796 21 1 -0.3633 -0.9262 -0.4452 22 1 3.1720 -0.8770 -1.2679 23 1 1.6113 -1.8596 -1.2675 24 1 4.2748 -0.4240 0.7384 25 1 4.2193 2.6625 0.7433 26 1 5.3206 1.3192 0.3544 27 1 5.9177 2.7230 1.2721 28 1 6.8910 0.8666 3.4777 29 1 5.7621 -0.2796 4.2387 30 1 6.2939 -0.5369 2.5597 31 1 3.3105 3.1019 3.6139 32 1 3.8803 2.0156 4.9037 33 1 5.0093 3.1617 4.1427 34 1 5.6498 -3.1435 2.4311 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705192231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = -42.118005 kcal Electronic energy + Delta-G solvation = -13426.810067 eV Core-core repulsion = 11290.784152 eV Total energy + Delta-G solvation = -2136.025915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02363 -37.30370 -35.79203 -30.29685 -29.49216 -28.53391 -28.30863 -27.65732 -22.83920 -21.34876 -21.11031 -18.39868 -17.18929 -16.55179 -16.12878 -15.06700 -14.60916 -14.50739 -14.23895 -13.98827 -13.85029 -13.72220 -13.29234 -13.26310 -13.20719 -13.06356 -12.89566 -12.59983 -12.48950 -12.26028 -11.94501 -11.65437 -11.34312 -11.08553 -10.77160 -10.61965 -10.39788 -9.86018 0.59169 1.06011 1.43327 1.46606 1.73629 1.89878 1.93302 2.08553 2.51059 2.86789 3.31992 3.82283 3.94746 4.04033 4.13504 4.40004 4.47258 4.73389 4.74196 4.77382 4.78226 4.80993 4.84696 4.86902 4.92082 4.95824 5.00459 5.17310 5.21464 5.33955 5.43043 5.54913 5.61173 5.75408 6.72441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.131 4.131 3 H 0.108 0.892 4 C -0.170 4.170 5 C -0.161 4.161 6 H 0.113 0.887 7 C 0.182 3.818 8 O -0.610 6.610 9 Si 1.255 2.745 10 C -0.508 4.508 11 C -0.519 4.519 12 C -0.468 4.468 13 C -0.028 4.028 14 N -0.611 5.611 15 Si 0.928 3.072 16 H -0.222 1.222 17 H -0.243 1.243 18 H -0.243 1.243 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -0.395 -0.561 1.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 H 0.127 0.873 4 C -0.207 4.207 5 C -0.179 4.179 6 H 0.131 0.869 7 C 0.124 3.876 8 O -0.567 6.567 9 Si 1.391 2.609 10 C -0.610 4.610 11 C -0.621 4.621 12 C -0.574 4.574 13 C -0.277 4.277 14 N -0.226 5.226 15 Si 0.744 3.256 16 H -0.144 1.144 17 H -0.167 1.167 18 H -0.167 1.167 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.116 0.884 23 H 0.119 0.881 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.199 -0.554 -0.527 1.422 hybrid contribution 0.565 -0.248 0.409 0.740 sum -0.634 -0.802 -0.118 1.029 Atomic orbital electron populations 1.21394 0.92517 1.02065 1.02281 1.22275 0.95476 0.94598 1.02590 0.87345 1.23269 1.03084 1.01948 0.92423 1.22437 0.98121 1.03567 0.93822 0.86928 1.20038 0.94859 0.84506 0.88185 1.85423 1.63343 1.47715 1.60239 0.77257 0.55834 0.61900 0.65867 1.26963 1.05957 1.08805 1.19244 1.27206 1.16644 1.11085 1.07177 1.26328 1.05715 1.12605 1.12744 1.30872 0.97783 1.00277 0.98764 1.68079 1.14754 1.18585 1.21226 0.85652 0.81836 0.78984 0.79157 1.14399 1.16651 1.16659 0.91779 0.91950 0.92499 0.88417 0.88093 0.90051 0.91043 0.91319 0.90833 0.91335 0.91764 0.89062 0.90787 0.90857 0.90608 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.11 10.19 37.16 0.38 0.49 16 2 C -0.13 0.05 6.04 -90.58 -0.55 -0.50 16 3 H 0.11 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.17 0.16 9.82 -26.70 -0.26 -0.10 16 5 C -0.16 0.01 4.78 -90.62 -0.43 -0.42 16 6 H 0.11 -0.05 5.84 -51.93 -0.30 -0.36 16 7 C 0.18 0.07 2.04 -27.88 -0.06 0.01 16 8 O -0.61 -0.38 7.97 -35.23 -0.28 -0.66 16 9 Si 1.25 -0.72 12.68 -169.99 -2.16 -2.88 16 10 C -0.51 0.12 8.56 101.05 0.87 0.99 16 11 C -0.52 -0.35 7.98 101.05 0.81 0.46 16 12 C -0.47 0.11 8.65 101.05 0.87 0.98 16 13 C -0.03 -0.01 4.13 -13.90 -0.06 -0.07 16 14 N -0.61 -0.36 11.40 56.22 0.64 0.28 16 15 Si 0.93 0.02 27.44 -169.99 -4.66 -4.64 16 16 H -0.22 -0.06 6.74 56.52 0.38 0.32 16 17 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 18 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 19 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 20 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 21 H 0.06 -0.07 7.90 -51.93 -0.41 -0.48 16 22 H 0.10 -0.13 8.05 -51.93 -0.42 -0.55 16 23 H 0.10 -0.17 8.05 -51.93 -0.42 -0.58 16 24 H 0.08 -0.02 5.88 -51.92 -0.31 -0.33 16 25 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 26 H 0.07 -0.01 7.10 -51.93 -0.37 -0.38 16 27 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 28 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 29 H 0.06 0.06 7.96 -51.93 -0.41 -0.36 16 30 H 0.09 0.13 5.48 -51.93 -0.28 -0.16 16 31 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 32 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 34 H 0.34 -0.34 8.23 -40.82 -0.34 -0.68 16 LS Contribution 279.33 15.07 4.21 4.21 Total: 0.00 -2.34 279.33 -6.50 -8.84 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: -5.82 Total: -6.98 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 1.57 Total: 1.84 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: 0.64 Total: 0.28 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -0.28 Total: -0.66 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -6.82 Total: -7.52 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -2.34 -6.50 -8.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705192231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.277 kcal (2) G-P(sol) polarization free energy of solvation -2.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds