Wall clock time and date at job start Mon Mar 30 2020 02:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54616 * 2 1 4 4 C 1.53003 * 117.52105 * 214.29873 * 2 1 3 5 5 C 1.52999 * 117.49990 * 145.66802 * 2 1 3 6 6 H 1.09004 * 117.49723 * 215.02911 * 5 2 1 7 7 C 1.52995 * 117.50046 * 0.02562 * 5 2 1 8 8 O 1.42899 * 109.47195 * 295.33537 * 7 5 2 9 9 Si 1.63103 * 113.99988 * 149.99580 * 8 7 5 10 10 C 1.86303 * 109.46801 * 60.00470 * 9 8 7 11 11 C 1.86305 * 109.47047 * 180.02562 * 9 8 7 12 12 C 1.86296 * 109.47460 * 300.00513 * 9 8 7 13 13 C 1.50699 * 109.47222 * 175.33639 * 7 5 2 14 14 N 1.27944 * 120.00267 * 235.91146 * 13 7 5 15 15 Si 1.86798 * 120.00152 * 55.91447 * 13 7 5 16 16 H 1.48502 * 109.47008 * 356.20564 * 15 13 7 17 17 H 1.48498 * 109.47504 * 116.20508 * 15 13 7 18 18 H 1.48504 * 109.47208 * 236.21021 * 15 13 7 19 19 H 1.08996 * 109.47075 * 276.21774 * 1 2 3 20 20 H 1.08996 * 109.47266 * 36.22113 * 1 2 3 21 21 H 1.09002 * 109.46866 * 156.22071 * 1 2 3 22 22 H 1.08994 * 117.49836 * 0.02562 * 4 2 1 23 23 H 1.09004 * 117.49527 * 145.02838 * 4 2 1 24 24 H 1.09003 * 109.47211 * 55.33780 * 7 5 2 25 25 H 1.08998 * 109.47178 * 59.99896 * 10 9 8 26 26 H 1.09004 * 109.46714 * 179.97438 * 10 9 8 27 27 H 1.09000 * 109.47000 * 299.99682 * 10 9 8 28 28 H 1.09000 * 109.46711 * 60.00425 * 11 9 8 29 29 H 1.08996 * 109.46833 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46922 * 299.99927 * 11 9 8 31 31 H 1.09000 * 109.47309 * 59.99725 * 12 9 8 32 32 H 1.08995 * 109.47483 * 180.02562 * 12 9 8 33 33 H 1.09002 * 109.46780 * 300.00125 * 12 9 8 34 34 H 0.97003 * 119.99444 * 0.02562 * 14 13 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2370 -1.1209 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1712 -0.8744 1.2693 7 6 1.3589 -2.1560 1.4717 8 8 0.6130 -1.5187 2.5107 9 14 -0.8317 -2.2133 2.8119 10 6 -0.5734 -3.9848 3.3278 11 6 -1.6931 -1.2869 4.1796 12 6 -1.8789 -2.1614 1.2720 13 6 2.2308 -3.2316 2.0666 14 7 2.0354 -4.4575 1.7570 15 14 3.5970 -2.7750 3.2559 16 1 3.6745 -1.2970 3.3770 17 1 3.3119 -3.3665 4.5879 18 1 4.8907 -3.2986 2.7484 19 1 -0.3633 0.1113 1.0216 20 1 -0.3633 0.8290 -0.6072 21 1 -0.3633 -0.9405 -0.4144 22 1 1.6121 -1.8584 -1.2682 23 1 3.1722 -0.8749 -1.2676 24 1 0.6721 -2.6017 0.7522 25 1 0.0393 -4.0152 4.2287 26 1 -1.5389 -4.4489 3.5295 27 1 -0.0697 -4.5266 2.5273 28 1 -1.8442 -0.2506 3.8774 29 1 -2.6583 -1.7514 4.3812 30 1 -1.0805 -1.3171 5.0807 31 1 -1.3751 -2.7031 0.4715 32 1 -2.8445 -2.6251 1.4734 33 1 -2.0299 -1.1249 0.9702 34 1 1.3262 -4.6945 1.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705192232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:41 Heat of formation + Delta-G solvation = -42.154306 kcal Electronic energy + Delta-G solvation = -13721.282998 eV Core-core repulsion = 11585.255509 eV Total energy + Delta-G solvation = -2136.027490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.35243 -37.29305 -35.76081 -30.35905 -29.39763 -28.90371 -28.44294 -27.56893 -22.81508 -22.17186 -20.79011 -18.15721 -17.85305 -16.34952 -15.81815 -15.68666 -14.65848 -14.35401 -14.16818 -14.04929 -13.76246 -13.70317 -13.45078 -13.34373 -13.16887 -13.05356 -12.86157 -12.69862 -12.61137 -12.31825 -11.94123 -11.60570 -11.32351 -11.11659 -10.98811 -10.77427 -10.63813 -9.89889 0.66198 1.24843 1.40331 1.71179 1.76809 1.89453 1.92102 2.01047 2.34422 2.82381 3.51820 3.61238 3.86509 3.90637 3.99947 4.35260 4.45823 4.55223 4.56595 4.62882 4.66640 4.67042 4.70080 4.74437 4.77276 4.87452 4.92934 5.10420 5.13828 5.23137 5.33674 5.42837 5.50265 5.53528 6.76596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 H 0.109 0.891 4 C -0.173 4.173 5 C -0.157 4.157 6 H 0.117 0.883 7 C 0.130 3.870 8 O -0.604 6.604 9 Si 1.243 2.757 10 C -0.513 4.513 11 C -0.464 4.464 12 C -0.511 4.511 13 C -0.050 4.050 14 N -0.611 5.611 15 Si 1.064 2.936 16 H -0.240 1.240 17 H -0.248 1.248 18 H -0.249 1.249 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 1.674 -0.862 1.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 H 0.127 0.873 4 C -0.210 4.210 5 C -0.176 4.176 6 H 0.135 0.865 7 C 0.071 3.929 8 O -0.562 6.562 9 Si 1.380 2.620 10 C -0.615 4.615 11 C -0.570 4.570 12 C -0.613 4.613 13 C -0.295 4.295 14 N -0.225 5.225 15 Si 0.878 3.122 16 H -0.163 1.163 17 H -0.172 1.172 18 H -0.173 1.173 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.112 0.888 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.783 1.157 -0.010 1.397 hybrid contribution -1.795 -0.107 -1.123 2.120 sum -1.012 1.050 -1.134 1.847 Atomic orbital electron populations 1.21648 0.92805 1.01999 1.02619 1.22272 0.95602 0.94435 1.02706 0.87287 1.23229 1.03224 1.01974 0.92570 1.22407 1.01261 1.00428 0.93546 0.86476 1.21347 0.92052 0.91795 0.87694 1.85444 1.49625 1.66260 1.54855 0.77439 0.55737 0.62549 0.66281 1.27192 1.05056 1.22732 1.06513 1.26257 1.08062 1.09039 1.13674 1.27166 1.11300 1.05035 1.17809 1.32374 1.04042 0.91976 1.01119 1.69490 1.20801 1.19372 1.12863 0.83548 0.73143 0.79981 0.75550 1.16316 1.17156 1.17276 0.90938 0.92067 0.92485 0.88787 0.87986 0.91817 0.90699 0.90807 0.91654 0.90634 0.90512 0.90584 0.91712 0.90749 0.90307 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 7.54 37.16 0.28 0.40 16 2 C -0.13 0.09 6.40 -90.62 -0.58 -0.49 16 3 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 4 C -0.17 0.20 9.82 -26.73 -0.26 -0.06 16 5 C -0.16 0.06 5.05 -90.62 -0.46 -0.39 16 6 H 0.12 -0.11 6.29 -51.93 -0.33 -0.44 16 7 C 0.13 -0.02 1.26 -27.89 -0.04 -0.06 16 8 O -0.60 0.00 6.87 -35.23 -0.24 -0.25 16 9 Si 1.24 -1.62 11.46 -169.99 -1.95 -3.57 16 10 C -0.51 0.00 8.04 101.05 0.81 0.82 16 11 C -0.46 0.41 8.65 101.05 0.87 1.28 16 12 C -0.51 0.64 7.26 101.05 0.73 1.38 16 13 C -0.05 -0.03 3.93 -13.90 -0.05 -0.09 16 14 N -0.61 -0.80 12.07 56.23 0.68 -0.12 16 15 Si 1.06 0.43 27.93 -169.99 -4.75 -4.32 16 16 H -0.24 0.05 6.88 56.52 0.39 0.44 16 17 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 18 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 19 H 0.07 -0.06 5.53 -51.93 -0.29 -0.35 16 20 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 21 H 0.06 -0.06 6.10 -51.93 -0.32 -0.38 16 22 H 0.09 -0.14 8.00 -51.93 -0.42 -0.55 16 23 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 24 H 0.06 -0.09 5.22 -51.93 -0.27 -0.36 16 25 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 26 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 27 H 0.06 0.02 5.26 -51.93 -0.27 -0.25 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.08 -0.05 7.96 -51.93 -0.41 -0.47 16 31 H 0.06 -0.09 6.75 -51.93 -0.35 -0.44 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.08 -0.10 6.14 -51.93 -0.32 -0.42 16 34 H 0.32 -0.04 7.66 -40.82 -0.31 -0.35 16 LS Contribution 266.53 15.07 4.02 4.02 Total: 0.00 -2.30 266.53 -6.36 -8.66 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -5.43 Total: -7.21 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 1.31 Total: 2.79 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: 0.68 Total: -0.12 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.24 Total: -0.25 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -6.70 Total: -7.89 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -2.30 -6.36 -8.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705192232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -2.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds