Wall clock time and date at job start Mon Mar 30 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54616 * 2 1 4 4 C 1.53003 * 117.52105 * 214.29873 * 2 1 3 5 5 C 1.52999 * 117.49990 * 145.66802 * 2 1 3 6 6 H 1.09004 * 117.49723 * 215.02911 * 5 2 1 7 7 C 1.52995 * 117.50046 * 0.02562 * 5 2 1 8 8 O 1.42899 * 109.47195 * 295.33537 * 7 5 2 9 9 Si 1.63103 * 113.99988 * 149.99580 * 8 7 5 10 10 C 1.86303 * 109.46801 * 60.00470 * 9 8 7 11 11 C 1.86305 * 109.47047 * 180.02562 * 9 8 7 12 12 C 1.86296 * 109.47460 * 300.00513 * 9 8 7 13 13 C 1.50699 * 109.47222 * 175.33639 * 7 5 2 14 14 N 1.27944 * 120.00267 * 235.91146 * 13 7 5 15 15 Si 1.86798 * 120.00152 * 55.91447 * 13 7 5 16 16 H 1.48502 * 109.47008 * 356.20564 * 15 13 7 17 17 H 1.48498 * 109.47504 * 116.20508 * 15 13 7 18 18 H 1.48504 * 109.47208 * 236.21021 * 15 13 7 19 19 H 1.08996 * 109.47075 * 276.21774 * 1 2 3 20 20 H 1.08996 * 109.47266 * 36.22113 * 1 2 3 21 21 H 1.09002 * 109.46866 * 156.22071 * 1 2 3 22 22 H 1.08994 * 117.49836 * 0.02562 * 4 2 1 23 23 H 1.09004 * 117.49527 * 145.02838 * 4 2 1 24 24 H 1.09003 * 109.47211 * 55.33780 * 7 5 2 25 25 H 1.08998 * 109.47178 * 59.99896 * 10 9 8 26 26 H 1.09004 * 109.46714 * 179.97438 * 10 9 8 27 27 H 1.09000 * 109.47000 * 299.99682 * 10 9 8 28 28 H 1.09000 * 109.46711 * 60.00425 * 11 9 8 29 29 H 1.08996 * 109.46833 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46922 * 299.99927 * 11 9 8 31 31 H 1.09000 * 109.47309 * 59.99725 * 12 9 8 32 32 H 1.08995 * 109.47483 * 180.02562 * 12 9 8 33 33 H 1.09002 * 109.46780 * 300.00125 * 12 9 8 34 34 H 0.97003 * 119.99444 * 0.02562 * 14 13 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2370 -1.1209 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1712 -0.8744 1.2693 7 6 1.3589 -2.1560 1.4717 8 8 0.6130 -1.5187 2.5107 9 14 -0.8317 -2.2133 2.8119 10 6 -0.5734 -3.9848 3.3278 11 6 -1.6931 -1.2869 4.1796 12 6 -1.8789 -2.1614 1.2720 13 6 2.2308 -3.2316 2.0666 14 7 2.0354 -4.4575 1.7570 15 14 3.5970 -2.7750 3.2559 16 1 3.6745 -1.2970 3.3770 17 1 3.3119 -3.3665 4.5879 18 1 4.8907 -3.2986 2.7484 19 1 -0.3633 0.1113 1.0216 20 1 -0.3633 0.8290 -0.6072 21 1 -0.3633 -0.9405 -0.4144 22 1 1.6121 -1.8584 -1.2682 23 1 3.1722 -0.8749 -1.2676 24 1 0.6721 -2.6017 0.7522 25 1 0.0393 -4.0152 4.2287 26 1 -1.5389 -4.4489 3.5295 27 1 -0.0697 -4.5266 2.5273 28 1 -1.8442 -0.2506 3.8774 29 1 -2.6583 -1.7514 4.3812 30 1 -1.0805 -1.3171 5.0807 31 1 -1.3751 -2.7031 0.4715 32 1 -2.8445 -2.6251 1.4734 33 1 -2.0299 -1.1249 0.9702 34 1 1.3262 -4.6945 1.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705192234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:47 Heat of formation + Delta-G solvation = -31.137171 kcal Electronic energy + Delta-G solvation = -13720.805260 eV Core-core repulsion = 11585.255509 eV Total energy + Delta-G solvation = -2135.549751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29482 -37.24031 -35.77797 -30.26729 -29.33761 -28.82501 -28.39916 -27.49772 -22.75536 -22.15405 -20.71248 -18.10741 -17.84042 -16.28668 -15.85018 -15.61661 -14.57840 -14.28406 -14.11765 -14.00545 -13.71291 -13.61985 -13.40869 -13.27855 -13.10402 -12.97196 -12.87027 -12.66566 -12.55975 -12.21304 -11.95248 -11.61987 -11.30422 -11.02859 -10.92239 -10.72093 -10.57111 -9.89747 0.63911 1.21502 1.46184 1.67848 1.84057 1.87086 1.94621 2.03177 2.41376 2.91334 3.56757 3.68189 3.95008 4.00955 4.07020 4.44832 4.54231 4.57213 4.64920 4.70057 4.72065 4.73804 4.77154 4.78128 4.89301 4.99341 5.03561 5.20212 5.24023 5.30468 5.43819 5.47313 5.57867 5.61263 6.76468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 H 0.112 0.888 4 C -0.170 4.170 5 C -0.169 4.169 6 H 0.120 0.880 7 C 0.128 3.872 8 O -0.613 6.613 9 Si 1.274 2.726 10 C -0.525 4.525 11 C -0.473 4.473 12 C -0.514 4.514 13 C -0.049 4.049 14 N -0.628 5.628 15 Si 1.070 2.930 16 H -0.229 1.229 17 H -0.261 1.261 18 H -0.255 1.255 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.097 0.903 23 H 0.109 0.891 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 2.064 -1.326 2.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 H 0.130 0.870 4 C -0.207 4.207 5 C -0.187 4.187 6 H 0.138 0.862 7 C 0.068 3.932 8 O -0.570 6.570 9 Si 1.409 2.591 10 C -0.625 4.625 11 C -0.580 4.580 12 C -0.616 4.616 13 C -0.294 4.294 14 N -0.243 5.243 15 Si 0.884 3.116 16 H -0.152 1.152 17 H -0.185 1.185 18 H -0.179 1.179 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.529 1.544 -0.468 1.698 hybrid contribution -1.712 -0.248 -0.959 1.977 sum -1.183 1.296 -1.427 2.262 Atomic orbital electron populations 1.21687 0.92750 1.02299 1.02677 1.22346 0.95773 0.94625 1.02735 0.86970 1.23296 1.03529 1.01734 0.92119 1.22480 1.01479 1.00688 0.94098 0.86225 1.21392 0.92260 0.91702 0.87815 1.85439 1.50111 1.66445 1.55040 0.76911 0.55196 0.61104 0.65891 1.27364 1.04972 1.24151 1.06035 1.26357 1.08451 1.09337 1.13811 1.27179 1.11422 1.05284 1.17754 1.32420 1.04058 0.92097 1.00841 1.69485 1.21486 1.19836 1.13491 0.83472 0.72821 0.80496 0.74795 1.15170 1.18501 1.17923 0.91023 0.91749 0.92230 0.88469 0.87291 0.90729 0.91616 0.90532 0.91974 0.90460 0.89987 0.90909 0.91463 0.90501 0.90054 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.32 7.54 71.98 0.54 0.86 16 2 C -0.14 0.26 6.40 -10.79 -0.07 0.19 16 3 H 0.11 -0.31 8.14 -2.38 -0.02 -0.33 16 4 C -0.17 0.49 9.82 30.60 0.30 0.79 16 5 C -0.17 0.19 5.05 -10.79 -0.05 0.13 16 6 H 0.12 -0.25 6.29 -2.38 -0.02 -0.26 16 7 C 0.13 -0.06 1.26 29.85 0.04 -0.02 16 8 O -0.61 0.05 6.87 -148.98 -1.02 -0.98 16 9 Si 1.27 -3.35 11.46 68.60 0.79 -2.57 16 10 C -0.52 -0.26 8.04 113.37 0.91 0.66 16 11 C -0.47 0.83 8.65 113.37 0.98 1.81 16 12 C -0.51 1.57 7.26 113.37 0.82 2.40 16 13 C -0.05 -0.07 3.93 88.67 0.35 0.27 16 14 N -0.63 -1.90 12.07 24.11 0.29 -1.61 16 15 Si 1.07 1.40 27.93 68.60 1.92 3.32 16 16 H -0.23 0.12 6.88 99.48 0.68 0.81 16 17 H -0.26 -0.85 7.11 99.48 0.71 -0.14 16 18 H -0.26 -0.56 7.11 99.48 0.71 0.15 16 19 H 0.07 -0.16 5.53 -2.39 -0.01 -0.17 16 20 H 0.06 -0.20 8.14 -2.39 -0.02 -0.21 16 21 H 0.06 -0.18 6.10 -2.39 -0.01 -0.19 16 22 H 0.10 -0.35 8.00 -2.39 -0.02 -0.37 16 23 H 0.11 -0.48 8.14 -2.38 -0.02 -0.50 16 24 H 0.08 -0.23 5.22 -2.39 -0.01 -0.24 16 25 H 0.06 0.14 7.96 -2.39 -0.02 0.13 16 26 H 0.08 -0.03 7.96 -2.38 -0.02 -0.05 16 27 H 0.06 0.07 5.26 -2.39 -0.01 0.06 16 28 H 0.08 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H 0.07 -0.23 6.75 -2.39 -0.02 -0.24 16 32 H 0.08 -0.26 7.96 -2.39 -0.02 -0.27 16 33 H 0.08 -0.27 6.14 -2.39 -0.01 -0.28 16 34 H 0.33 0.04 7.66 -92.71 -0.71 -0.67 16 Total: 0.00 -4.98 266.53 6.89 1.91 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 1.10 Total: -3.34 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 3.82 Total: 7.09 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: 0.29 Total: -1.61 kcal Atomic # 8 Polarization: 0.05 SS G_CDS: -1.02 Total: -0.98 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.70 Total: 0.75 kcal Total: -4.98 6.89 1.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705192234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.052 kcal (2) G-P(sol) polarization free energy of solvation -4.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds