Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99989 * 2 1 4 4 C 1.50692 * 110.29148 * 302.60826 * 3 2 1 5 5 O 1.21294 * 120.00137 * 141.93078 * 4 3 2 6 6 N 1.34780 * 119.99995 * 321.93068 * 4 3 2 7 7 C 1.37105 * 120.00015 * 174.97297 * 6 4 3 8 8 H 1.07993 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99769 * 180.27648 * 7 6 4 10 10 N 1.31416 * 120.00078 * 359.72093 * 9 7 6 11 11 Si 1.86794 * 119.99907 * 179.72251 * 9 7 6 12 12 H 1.48505 * 109.47384 * 59.99843 * 11 9 7 13 13 H 1.48499 * 109.47316 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47163 * 299.99820 * 11 9 7 15 15 C 1.54265 * 110.31990 * 180.47802 * 3 2 1 16 16 C 1.54376 * 105.06042 * 241.00379 * 15 3 2 17 17 N 1.48560 * 104.59585 * 23.85326 * 16 15 3 18 18 C 1.48559 * 104.22110 * 320.51986 * 17 16 15 19 19 H 1.09012 * 109.47032 * 55.00756 * 1 2 3 20 20 H 1.08998 * 109.47617 * 175.00602 * 1 2 3 21 21 H 1.09003 * 109.46954 * 295.01005 * 1 2 3 22 22 H 0.96996 * 120.00190 * 354.96591 * 6 4 3 23 23 H 0.97004 * 119.99631 * 180.02562 * 10 9 7 24 24 H 1.09000 * 110.32704 * 359.90514 * 15 3 2 25 25 H 1.09005 * 110.31955 * 122.11092 * 15 3 2 26 26 H 1.09001 * 110.41042 * 142.63826 * 16 15 3 27 27 H 1.09000 * 110.41580 * 264.95886 * 16 15 3 28 28 H 1.00903 * 110.99367 * 80.07451 * 17 16 15 29 29 H 1.09001 * 110.40784 * 280.69780 * 18 17 16 30 30 H 1.09004 * 110.41072 * 158.25808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5269 2.0927 -1.1906 5 8 1.2907 3.2772 -1.0792 6 7 1.3572 1.4806 -2.3794 7 6 0.8205 2.1708 -3.4354 8 1 0.5332 3.2048 -3.3145 9 6 0.6402 1.5381 -4.6593 10 7 0.9893 0.2797 -4.8061 11 14 -0.0983 2.4763 -6.0958 12 1 0.7607 3.6439 -6.4187 13 1 -0.1836 1.5830 -7.2790 14 1 -1.4586 2.9480 -5.7321 15 6 3.5496 1.2065 -0.0121 16 6 4.0062 1.8975 1.2907 17 7 2.8324 1.8023 2.1962 18 6 1.6663 2.0478 1.3091 19 1 -0.3634 0.5894 -0.8420 20 1 -0.3634 -1.0237 -0.0895 21 1 -0.3633 0.4345 0.9313 22 1 1.6150 0.5518 -2.4878 23 1 0.8638 -0.1618 -5.6607 24 1 3.8619 0.1622 -0.0163 25 1 3.9556 1.7274 -0.8793 26 1 4.8606 1.3737 1.7195 27 1 4.2577 2.9407 1.0998 28 1 2.7771 0.8891 2.6217 29 1 1.5495 3.1152 1.1214 30 1 0.7587 1.6373 1.7518 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707455679.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = -76.392409 kcal Electronic energy + Delta-G solvation = -15092.778475 eV Core-core repulsion = 12502.175258 eV Total energy + Delta-G solvation = -2590.603217 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.90812 -37.04735 -35.92013 -33.99607 -31.27573 -29.62975 -28.21154 -26.14220 -25.07712 -21.68921 -21.43063 -18.86930 -18.03067 -17.08030 -16.23103 -15.45936 -14.81454 -14.43741 -14.14228 -13.91157 -13.52009 -13.34240 -12.81564 -12.10958 -11.84804 -11.64219 -11.34372 -11.28345 -11.09836 -10.91441 -10.57672 -10.48687 -10.28941 -9.73640 -9.54269 -8.72493 -8.10613 -8.03397 -6.48987 -3.90686 3.13318 3.21180 3.25207 3.70059 3.99807 4.12984 4.43096 4.83565 5.00356 5.20643 5.29094 5.37626 5.53751 5.69738 5.81739 5.90214 6.03749 6.11303 6.17079 6.28649 6.33463 6.41314 6.76538 7.40526 7.46893 7.53171 7.97647 8.52415 9.07730 9.45727 9.95303 10.67212 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048000 B = 0.008913 C = 0.008559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.189463 B = 3140.673446 C = 3270.554618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.073 3.927 4 C 0.421 3.579 5 O -0.591 6.591 6 N -0.545 5.545 7 C -0.307 4.307 8 H 0.103 0.897 9 C 0.026 3.974 10 N -0.893 5.893 11 Si 0.932 3.068 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.273 1.273 15 C -0.138 4.138 16 C 0.043 3.957 17 N -0.664 5.664 18 C 0.028 3.972 19 H 0.058 0.942 20 H 0.084 0.916 21 H 0.038 0.962 22 H 0.398 0.602 23 H 0.274 0.726 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.334 0.666 29 H 0.108 0.892 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -2.287 7.999 8.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.029 3.971 4 C 0.205 3.795 5 O -0.477 6.477 6 N -0.180 5.180 7 C -0.437 4.437 8 H 0.121 0.879 9 C -0.177 4.177 10 N -0.533 5.533 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.178 4.178 16 C -0.087 4.087 17 N -0.290 5.290 18 C -0.102 4.102 19 H 0.077 0.923 20 H 0.102 0.898 21 H 0.056 0.944 22 H 0.232 0.768 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.119 -1.131 8.230 8.573 hybrid contribution -0.511 -0.909 -1.535 1.856 sum 1.608 -2.040 6.695 7.181 Atomic orbital electron populations 1.22847 0.80985 1.02716 1.00756 1.87895 1.20094 1.26399 1.94988 1.23118 0.94521 0.83667 0.95842 1.20081 0.86096 0.88400 0.84890 1.90511 1.57174 1.15526 1.84531 1.41941 1.53348 1.14102 1.08595 1.19717 1.37452 0.97724 0.88770 0.87898 1.25322 0.97448 0.95856 0.99045 1.69631 1.46860 1.10377 1.26421 0.85906 0.79583 0.78984 0.79697 1.19777 1.20830 1.19803 1.22864 0.91957 1.02503 1.00436 1.23005 0.93853 1.01348 0.90466 1.63360 1.02468 1.34768 1.28371 1.23515 0.93807 1.03124 0.89745 0.92337 0.89752 0.94355 0.76794 0.91609 0.89948 0.89761 0.90675 0.89943 0.85152 0.87374 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.39 101.05 1.05 1.45 16 2 O -0.37 -7.00 9.86 -35.23 -0.35 -7.34 16 3 C 0.07 1.41 1.00 -90.39 -0.09 1.31 16 4 C 0.42 10.16 5.21 -10.99 -0.06 10.11 16 5 O -0.59 -16.11 15.11 5.55 0.08 -16.03 16 6 N -0.54 -14.07 4.49 -10.97 -0.05 -14.12 16 7 C -0.31 -8.55 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 2.98 7.17 -52.49 -0.38 2.61 16 9 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 10 N -0.89 -24.24 13.05 55.50 0.72 -23.51 16 11 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C -0.14 -2.32 6.44 -25.35 -0.16 -2.48 16 16 C 0.04 0.62 7.47 -2.18 -0.02 0.60 16 17 N -0.66 -9.90 7.62 -109.66 -0.84 -10.73 16 18 C 0.03 0.50 6.49 -2.19 -0.01 0.48 16 19 H 0.06 1.18 6.50 -51.92 -0.34 0.84 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 22 H 0.40 10.22 7.55 -40.82 -0.31 9.92 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.08 1.28 7.98 -51.93 -0.41 0.86 16 25 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.33 4.39 8.92 -39.29 -0.35 4.04 16 29 H 0.11 2.15 6.79 -51.93 -0.35 1.80 16 30 H 0.08 1.23 6.19 -51.93 -0.32 0.91 16 LS Contribution 251.20 15.07 3.79 3.79 Total: -1.00 -29.96 251.20 -4.79 -34.75 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -3.60 Total: 14.00 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.47 Total: 3.38 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.16 Total: -48.37 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.26 Total: -23.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.96 -4.79 -34.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707455679.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.638 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds