Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99989 * 2 1 4 4 C 1.50692 * 110.29148 * 302.60826 * 3 2 1 5 5 O 1.21294 * 120.00137 * 141.93078 * 4 3 2 6 6 N 1.34780 * 119.99995 * 321.93068 * 4 3 2 7 7 C 1.37105 * 120.00015 * 174.97297 * 6 4 3 8 8 H 1.07993 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99769 * 180.27648 * 7 6 4 10 10 N 1.31416 * 120.00078 * 359.72093 * 9 7 6 11 11 Si 1.86794 * 119.99907 * 179.72251 * 9 7 6 12 12 H 1.48505 * 109.47384 * 59.99843 * 11 9 7 13 13 H 1.48499 * 109.47316 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47163 * 299.99820 * 11 9 7 15 15 C 1.54265 * 110.31990 * 180.47802 * 3 2 1 16 16 C 1.54376 * 105.06042 * 241.00379 * 15 3 2 17 17 N 1.48560 * 104.59585 * 23.85326 * 16 15 3 18 18 C 1.48559 * 104.22110 * 320.51986 * 17 16 15 19 19 H 1.09012 * 109.47032 * 55.00756 * 1 2 3 20 20 H 1.08998 * 109.47617 * 175.00602 * 1 2 3 21 21 H 1.09003 * 109.46954 * 295.01005 * 1 2 3 22 22 H 0.96996 * 120.00190 * 354.96591 * 6 4 3 23 23 H 0.97004 * 119.99631 * 180.02562 * 10 9 7 24 24 H 1.09000 * 110.32704 * 359.90514 * 15 3 2 25 25 H 1.09005 * 110.31955 * 122.11092 * 15 3 2 26 26 H 1.09001 * 110.41042 * 142.63826 * 16 15 3 27 27 H 1.09000 * 110.41580 * 264.95886 * 16 15 3 28 28 H 1.00903 * 110.99367 * 80.07451 * 17 16 15 29 29 H 1.09001 * 110.40784 * 280.69780 * 18 17 16 30 30 H 1.09004 * 110.41072 * 158.25808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5269 2.0927 -1.1906 5 8 1.2907 3.2772 -1.0792 6 7 1.3572 1.4806 -2.3794 7 6 0.8205 2.1708 -3.4354 8 1 0.5332 3.2048 -3.3145 9 6 0.6402 1.5381 -4.6593 10 7 0.9893 0.2797 -4.8061 11 14 -0.0983 2.4763 -6.0958 12 1 0.7607 3.6439 -6.4187 13 1 -0.1836 1.5830 -7.2790 14 1 -1.4586 2.9480 -5.7321 15 6 3.5496 1.2065 -0.0121 16 6 4.0062 1.8975 1.2907 17 7 2.8324 1.8023 2.1962 18 6 1.6663 2.0478 1.3091 19 1 -0.3634 0.5894 -0.8420 20 1 -0.3634 -1.0237 -0.0895 21 1 -0.3633 0.4345 0.9313 22 1 1.6150 0.5518 -2.4878 23 1 0.8638 -0.1618 -5.6607 24 1 3.8619 0.1622 -0.0163 25 1 3.9556 1.7274 -0.8793 26 1 4.8606 1.3737 1.7195 27 1 4.2577 2.9407 1.0998 28 1 2.7771 0.8891 2.6217 29 1 1.5495 3.1152 1.1214 30 1 0.7587 1.6373 1.7518 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707455679.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = -101.181059 kcal Electronic energy + Delta-G solvation = -15093.853391 eV Core-core repulsion = 12502.175258 eV Total energy + Delta-G solvation = -2591.678133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.52676 -38.83987 -37.32874 -36.02576 -33.32297 -31.03625 -29.61353 -27.60885 -27.01924 -23.33607 -22.75678 -20.63376 -19.99606 -18.71816 -17.69769 -17.11219 -16.63063 -16.00624 -15.81406 -15.48283 -15.22923 -14.79870 -14.59013 -13.69685 -13.41257 -13.23732 -13.01503 -12.75444 -12.63889 -12.51396 -12.25484 -12.15742 -11.98234 -11.59669 -11.16167 -10.36066 -10.09754 -9.64083 -8.53612 -6.04637 1.33197 1.38109 1.49468 1.84022 2.22699 2.57411 2.95684 3.09313 3.27771 3.69665 3.86961 4.09123 4.22757 4.29854 4.34842 4.49635 4.53007 4.76344 4.82274 4.95588 4.98709 5.00073 5.32459 5.47945 5.80553 6.03470 6.39887 6.49570 7.00978 7.42934 7.95146 8.62328 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048000 B = 0.008913 C = 0.008559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.189463 B = 3140.673446 C = 3270.554618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.375 6.375 3 C 0.076 3.924 4 C 0.419 3.581 5 O -0.628 6.628 6 N -0.552 5.552 7 C -0.343 4.343 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.913 5.913 11 Si 0.996 3.004 12 H -0.271 1.271 13 H -0.268 1.268 14 H -0.269 1.269 15 C -0.138 4.138 16 C 0.049 3.951 17 N -0.655 5.655 18 C 0.036 3.964 19 H 0.021 0.979 20 H 0.110 0.890 21 H 0.061 0.939 22 H 0.397 0.603 23 H 0.281 0.719 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.349 0.651 29 H 0.080 0.920 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -3.183 8.694 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.293 6.293 3 C 0.032 3.968 4 C 0.206 3.794 5 O -0.516 6.516 6 N -0.187 5.187 7 C -0.472 4.472 8 H 0.099 0.901 9 C -0.209 4.209 10 N -0.553 5.553 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.192 1.192 14 H -0.194 1.194 15 C -0.177 4.177 16 C -0.081 4.081 17 N -0.282 5.282 18 C -0.095 4.095 19 H 0.040 0.960 20 H 0.129 0.871 21 H 0.079 0.921 22 H 0.231 0.769 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.166 0.834 29 H 0.098 0.902 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.476 -2.055 8.944 9.505 hybrid contribution -0.619 -0.649 -1.706 1.927 sum 1.857 -2.704 7.238 7.947 Atomic orbital electron populations 1.22967 0.80231 1.03950 1.00348 1.87900 1.20905 1.25675 1.94842 1.23127 0.96114 0.83561 0.94025 1.21043 0.84359 0.88326 0.85688 1.90477 1.58343 1.17460 1.85341 1.41975 1.53826 1.13891 1.09017 1.19713 1.39691 0.97378 0.90422 0.90086 1.26134 0.97153 0.96714 1.00923 1.69695 1.46908 1.11308 1.27353 0.84959 0.78692 0.77869 0.76648 1.19626 1.19205 1.19418 1.22920 0.89879 1.03715 1.01191 1.23055 0.94700 1.01218 0.89096 1.63295 1.01486 1.35957 1.27475 1.23338 0.95642 1.01200 0.89346 0.96003 0.87136 0.92055 0.76926 0.90993 0.88168 0.91674 0.86821 0.90733 0.83397 0.90154 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 10.39 113.37 1.18 1.88 16 2 O -0.37 -13.44 9.86 -148.98 -1.47 -14.91 16 3 C 0.08 2.89 1.00 -10.65 -0.01 2.88 16 4 C 0.42 20.78 5.21 87.65 0.46 21.24 16 5 O -0.63 -35.48 15.11 -3.07 -0.05 -35.53 16 6 N -0.55 -29.37 4.49 -306.99 -1.38 -30.75 16 7 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 8 H 0.08 4.91 7.17 -2.91 -0.02 4.89 16 9 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 10 N -0.91 -49.57 13.05 21.66 0.28 -49.29 16 11 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 C -0.14 -4.42 6.44 31.49 0.20 -4.22 16 16 C 0.05 1.27 7.47 86.45 0.65 1.92 16 17 N -0.66 -17.76 7.62 -500.87 -3.82 -21.58 16 18 C 0.04 1.20 6.49 86.45 0.56 1.76 16 19 H 0.02 0.88 6.50 -2.38 -0.02 0.86 16 20 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 21 H 0.06 1.73 6.46 -2.39 -0.02 1.71 16 22 H 0.40 20.87 7.55 -92.71 -0.70 20.17 16 23 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.10 2.86 7.98 -2.39 -0.02 2.84 16 25 H 0.06 2.34 7.70 -2.38 -0.02 2.32 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.35 7.89 8.92 -89.69 -0.80 7.09 16 29 H 0.08 3.22 6.79 -2.39 -0.02 3.20 16 30 H 0.09 2.75 6.19 -2.39 -0.01 2.74 16 Total: -1.00 -65.35 251.20 -0.42 -65.77 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -0.33 Total: 34.97 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.31 Total: 6.63 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -4.92 Total: -101.62 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -1.52 Total: -50.44 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.35 -0.42 -65.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707455679.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.408 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds