Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99776 * 2 1 4 4 C 1.50699 * 110.37011 * 59.01544 * 3 2 1 5 5 O 1.21289 * 119.99922 * 218.88236 * 4 3 2 6 6 N 1.34776 * 119.99868 * 38.88400 * 4 3 2 7 7 C 1.37101 * 120.00089 * 184.56872 * 6 4 3 8 8 H 1.08007 * 119.99420 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00226 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99757 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47227 * 59.99731 * 11 9 7 13 13 H 1.48504 * 109.47255 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47079 * 299.99946 * 11 9 7 15 15 C 1.54258 * 110.31931 * 181.19739 * 3 2 1 16 16 C 1.54381 * 105.15009 * 118.84515 * 15 3 2 17 17 N 1.48715 * 104.51861 * 336.26692 * 16 15 3 18 18 C 1.48565 * 104.28738 * 39.36238 * 17 16 15 19 19 H 1.09001 * 109.47237 * 55.98999 * 1 2 3 20 20 H 1.08998 * 109.47290 * 175.98188 * 1 2 3 21 21 H 1.09004 * 109.47285 * 295.98766 * 1 2 3 22 22 H 0.96996 * 119.99954 * 4.57338 * 6 4 3 23 23 H 0.96994 * 119.99583 * 179.97438 * 10 9 7 24 24 H 1.09000 * 110.32578 * 237.79052 * 15 3 2 25 25 H 1.09000 * 110.32704 * 359.89708 * 15 3 2 26 26 H 1.08998 * 110.41304 * 94.97764 * 16 15 3 27 27 H 1.08999 * 110.41131 * 217.41578 * 16 15 3 28 28 H 1.00896 * 111.02056 * 158.96502 * 17 16 15 29 29 H 1.09001 * 110.41466 * 201.79434 * 18 17 16 30 30 H 1.08998 * 110.50962 * 79.40471 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5591 2.0805 1.2112 5 8 1.3068 3.2629 1.1151 6 7 1.4361 1.4596 2.4011 7 6 0.9368 2.1405 3.4812 8 1 0.6425 3.1746 3.3786 9 6 0.8105 1.5007 4.7081 10 7 1.1701 0.2429 4.8332 11 14 0.1296 2.4283 6.1795 12 1 -1.2465 2.8967 5.8758 13 1 0.0974 1.5284 7.3604 14 1 0.9971 3.5975 6.4723 15 6 3.5493 1.2066 -0.0302 16 6 3.9731 1.9093 -1.3379 17 7 2.7732 1.8247 -2.2124 18 6 1.6313 2.0611 -1.2918 19 1 -0.3634 0.5748 -0.8519 20 1 -0.3634 -1.0251 -0.0720 21 1 -0.3634 0.4503 0.9238 22 1 1.7009 0.5311 2.4933 23 1 1.0823 -0.2036 5.6898 24 1 3.9786 1.7187 0.8309 25 1 3.8615 0.1623 -0.0432 26 1 4.2292 2.9509 -1.1441 27 1 4.8153 1.3884 -1.7936 28 1 2.8039 2.5254 -2.9377 29 1 0.7122 1.6549 -1.7141 30 1 1.5178 3.1261 -1.0898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707455680.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = -74.415149 kcal Electronic energy + Delta-G solvation = -15068.909603 eV Core-core repulsion = 12478.392126 eV Total energy + Delta-G solvation = -2590.517476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.78162 -36.97381 -35.85298 -33.99085 -31.27952 -29.85635 -28.18283 -26.06891 -25.11853 -21.66191 -21.23605 -18.83676 -18.02390 -16.95774 -16.50786 -15.12206 -14.74792 -14.49837 -14.21494 -13.86498 -13.55422 -13.04876 -12.72365 -12.23334 -11.86769 -11.60402 -11.50844 -11.27439 -11.11699 -10.98533 -10.52051 -10.48398 -10.27778 -9.63606 -9.47150 -8.44017 -8.19111 -8.03307 -6.48109 -3.89855 3.13795 3.21691 3.25565 3.71860 4.04446 4.18099 4.41697 4.87361 4.99481 5.07830 5.33785 5.43060 5.67163 5.77662 5.89444 5.95178 6.05459 6.09949 6.15361 6.24646 6.33844 6.42476 6.80668 7.43966 7.47613 7.56188 7.98959 8.53235 9.08287 9.46671 9.96128 10.68087 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.008889 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.610506 B = 3149.284634 C = 3276.908170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.366 6.366 3 C 0.107 3.893 4 C 0.417 3.583 5 O -0.596 6.596 6 N -0.542 5.542 7 C -0.308 4.308 8 H 0.103 0.897 9 C 0.027 3.973 10 N -0.891 5.891 11 Si 0.932 3.068 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.273 1.273 15 C -0.107 4.107 16 C 0.038 3.962 17 N -0.662 5.662 18 C 0.020 3.980 19 H 0.040 0.960 20 H 0.083 0.917 21 H 0.054 0.946 22 H 0.399 0.601 23 H 0.274 0.726 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.333 0.667 29 H 0.084 0.916 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -0.433 -8.297 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.284 6.284 3 C 0.063 3.937 4 C 0.201 3.799 5 O -0.482 6.482 6 N -0.177 5.177 7 C -0.437 4.437 8 H 0.121 0.879 9 C -0.176 4.176 10 N -0.531 5.531 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.145 4.145 16 C -0.091 4.091 17 N -0.290 5.290 18 C -0.110 4.110 19 H 0.058 0.942 20 H 0.102 0.898 21 H 0.072 0.928 22 H 0.233 0.767 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.900 -0.721 -8.220 8.467 hybrid contribution -0.349 1.014 1.073 1.517 sum 1.551 0.292 -7.147 7.319 Atomic orbital electron populations 1.22834 0.81281 1.02225 1.00910 1.87931 1.19775 1.25909 1.94824 1.22284 0.94526 0.83478 0.93402 1.20170 0.86254 0.88348 0.85088 1.90498 1.56798 1.15767 1.85168 1.41907 1.54026 1.14140 1.07590 1.19711 1.38782 0.97872 0.87347 0.87930 1.25324 0.97309 0.95836 0.99168 1.69629 1.46707 1.10192 1.26583 0.85908 0.79504 0.78949 0.79808 1.19807 1.20803 1.19808 1.22291 0.91950 1.02594 0.97694 1.22927 0.94093 0.99024 0.93053 1.63749 1.02211 1.51667 1.11361 1.23358 0.94976 1.00710 0.91920 0.94190 0.89824 0.92774 0.76674 0.91571 0.90062 0.89338 0.93866 0.89953 0.85269 0.89789 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.39 101.05 1.05 1.47 16 2 O -0.37 -7.22 9.88 -35.23 -0.35 -7.57 16 3 C 0.11 2.13 1.00 -90.39 -0.09 2.04 16 4 C 0.42 10.16 5.36 -10.99 -0.06 10.10 16 5 O -0.60 -16.25 15.10 5.55 0.08 -16.17 16 6 N -0.54 -14.09 4.61 -10.96 -0.05 -14.14 16 7 C -0.31 -8.58 9.68 -14.93 -0.14 -8.72 16 8 H 0.10 2.98 7.17 -52.48 -0.38 2.60 16 9 C 0.03 0.71 5.50 -17.47 -0.10 0.62 16 10 N -0.89 -24.23 13.05 55.50 0.72 -23.51 16 11 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 C -0.11 -1.87 6.44 -25.35 -0.16 -2.03 16 16 C 0.04 0.56 7.48 -2.09 -0.02 0.55 16 17 N -0.66 -9.99 7.62 -109.54 -0.84 -10.83 16 18 C 0.02 0.36 6.47 -2.18 -0.01 0.34 16 19 H 0.04 0.64 6.11 -51.93 -0.32 0.33 16 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 21 H 0.05 1.10 6.90 -51.93 -0.36 0.74 16 22 H 0.40 10.31 7.57 -40.82 -0.31 10.01 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 24 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 25 H 0.09 1.46 7.98 -51.93 -0.41 1.05 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.33 4.15 8.92 -39.29 -0.35 3.80 16 29 H 0.08 1.42 5.98 -51.93 -0.31 1.11 16 30 H 0.07 1.39 6.79 -51.93 -0.35 1.03 16 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -30.46 251.32 -4.79 -35.25 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -3.59 Total: 13.00 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.47 Total: 4.36 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.16 Total: -48.47 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.26 Total: -23.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.46 -4.79 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707455680.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.165 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds