Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99776 * 2 1 4 4 C 1.50699 * 110.37011 * 59.01544 * 3 2 1 5 5 O 1.21289 * 119.99922 * 218.88236 * 4 3 2 6 6 N 1.34776 * 119.99868 * 38.88400 * 4 3 2 7 7 C 1.37101 * 120.00089 * 184.56872 * 6 4 3 8 8 H 1.08007 * 119.99420 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00226 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99757 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47227 * 59.99731 * 11 9 7 13 13 H 1.48504 * 109.47255 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47079 * 299.99946 * 11 9 7 15 15 C 1.54258 * 110.31931 * 181.19739 * 3 2 1 16 16 C 1.54381 * 105.15009 * 118.84515 * 15 3 2 17 17 N 1.48715 * 104.51861 * 336.26692 * 16 15 3 18 18 C 1.48565 * 104.28738 * 39.36238 * 17 16 15 19 19 H 1.09001 * 109.47237 * 55.98999 * 1 2 3 20 20 H 1.08998 * 109.47290 * 175.98188 * 1 2 3 21 21 H 1.09004 * 109.47285 * 295.98766 * 1 2 3 22 22 H 0.96996 * 119.99954 * 4.57338 * 6 4 3 23 23 H 0.96994 * 119.99583 * 179.97438 * 10 9 7 24 24 H 1.09000 * 110.32578 * 237.79052 * 15 3 2 25 25 H 1.09000 * 110.32704 * 359.89708 * 15 3 2 26 26 H 1.08998 * 110.41304 * 94.97764 * 16 15 3 27 27 H 1.08999 * 110.41131 * 217.41578 * 16 15 3 28 28 H 1.00896 * 111.02056 * 158.96502 * 17 16 15 29 29 H 1.09001 * 110.41466 * 201.79434 * 18 17 16 30 30 H 1.08998 * 110.50962 * 79.40471 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5591 2.0805 1.2112 5 8 1.3068 3.2629 1.1151 6 7 1.4361 1.4596 2.4011 7 6 0.9368 2.1405 3.4812 8 1 0.6425 3.1746 3.3786 9 6 0.8105 1.5007 4.7081 10 7 1.1701 0.2429 4.8332 11 14 0.1296 2.4283 6.1795 12 1 -1.2465 2.8967 5.8758 13 1 0.0974 1.5284 7.3604 14 1 0.9971 3.5975 6.4723 15 6 3.5493 1.2066 -0.0302 16 6 3.9731 1.9093 -1.3379 17 7 2.7732 1.8247 -2.2124 18 6 1.6313 2.0611 -1.2918 19 1 -0.3634 0.5748 -0.8519 20 1 -0.3634 -1.0251 -0.0720 21 1 -0.3634 0.4503 0.9238 22 1 1.7009 0.5311 2.4933 23 1 1.0823 -0.2036 5.6898 24 1 3.9786 1.7187 0.8309 25 1 3.8615 0.1623 -0.0432 26 1 4.2292 2.9509 -1.1441 27 1 4.8153 1.3884 -1.7936 28 1 2.8039 2.5254 -2.9377 29 1 0.7122 1.6549 -1.7141 30 1 1.5178 3.1261 -1.0898 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707455680.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = -99.564450 kcal Electronic energy + Delta-G solvation = -15070.000158 eV Core-core repulsion = 12478.392126 eV Total energy + Delta-G solvation = -2591.608032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44346 -38.77082 -37.29419 -36.02520 -33.32923 -31.28813 -29.60553 -27.56165 -27.08743 -23.38798 -22.52848 -20.62614 -19.98483 -18.71894 -17.91201 -16.97569 -16.33674 -16.09597 -15.85442 -15.63574 -15.14246 -14.85398 -14.15838 -13.87333 -13.52817 -13.27552 -12.99761 -12.83762 -12.68338 -12.50594 -12.33681 -12.15155 -12.02805 -11.59392 -11.10948 -10.17771 -10.06946 -9.61855 -8.53059 -6.04267 1.33670 1.38785 1.50330 1.83823 2.23020 2.63057 2.91396 3.10720 3.36041 3.63484 3.75432 4.14597 4.22855 4.34031 4.39097 4.54353 4.58090 4.68019 4.77499 4.83398 4.97496 5.03473 5.32954 5.50213 5.82862 6.09107 6.35768 6.49478 7.00870 7.42919 7.94559 8.63055 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.008889 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.610506 B = 3149.284634 C = 3276.908170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.371 6.371 3 C 0.106 3.894 4 C 0.417 3.583 5 O -0.630 6.630 6 N -0.550 5.550 7 C -0.343 4.343 8 H 0.082 0.918 9 C -0.008 4.008 10 N -0.912 5.912 11 Si 0.996 3.004 12 H -0.269 1.269 13 H -0.268 1.268 14 H -0.271 1.271 15 C -0.110 4.110 16 C 0.044 3.956 17 N -0.654 5.654 18 C 0.027 3.973 19 H 0.057 0.943 20 H 0.113 0.887 21 H 0.021 0.979 22 H 0.397 0.603 23 H 0.281 0.719 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.351 0.649 29 H 0.093 0.907 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 -0.883 -8.959 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.289 6.289 3 C 0.062 3.938 4 C 0.203 3.797 5 O -0.518 6.518 6 N -0.184 5.184 7 C -0.472 4.472 8 H 0.100 0.900 9 C -0.209 4.209 10 N -0.551 5.551 11 Si 0.819 3.181 12 H -0.194 1.194 13 H -0.192 1.192 14 H -0.196 1.196 15 C -0.149 4.149 16 C -0.086 4.086 17 N -0.284 5.284 18 C -0.103 4.103 19 H 0.075 0.925 20 H 0.131 0.869 21 H 0.040 0.960 22 H 0.232 0.768 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.168 0.832 29 H 0.111 0.889 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.238 -1.184 -8.905 9.258 hybrid contribution -0.449 1.135 1.239 1.739 sum 1.789 -0.049 -7.666 7.872 Atomic orbital electron populations 1.22960 0.80401 1.04145 0.99929 1.87931 1.20778 1.25546 1.94689 1.22296 0.96161 0.83359 0.91947 1.21050 0.84534 0.88223 0.85884 1.90463 1.57904 1.17528 1.85934 1.41946 1.54505 1.13947 1.08003 1.19721 1.41032 0.97554 0.88941 0.89998 1.26153 0.96870 0.96655 1.01245 1.69696 1.46707 1.11156 1.27588 0.84947 0.78750 0.77870 0.76521 1.19414 1.19208 1.19572 1.22372 0.89944 1.03578 0.98976 1.22990 0.94645 0.99353 0.91563 1.63745 1.01279 1.52374 1.11022 1.23213 0.96545 0.99107 0.91432 0.92451 0.86904 0.96027 0.76848 0.90944 0.91496 0.88242 0.93486 0.86781 0.83215 0.88902 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 10.39 113.37 1.18 1.93 16 2 O -0.37 -14.29 9.88 -148.98 -1.47 -15.76 16 3 C 0.11 4.17 1.00 -10.64 -0.01 4.16 16 4 C 0.42 20.77 5.36 87.66 0.47 21.25 16 5 O -0.63 -35.37 15.10 -3.06 -0.05 -35.42 16 6 N -0.55 -29.39 4.61 -306.98 -1.42 -30.81 16 7 C -0.34 -19.69 9.68 84.04 0.81 -18.88 16 8 H 0.08 4.95 7.17 -2.91 -0.02 4.93 16 9 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 10 N -0.91 -49.64 13.05 21.66 0.28 -49.36 16 11 Si 1.00 42.58 29.55 68.60 2.03 44.61 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 15 C -0.11 -3.72 6.44 31.49 0.20 -3.52 16 16 C 0.04 1.16 7.48 86.42 0.65 1.80 16 17 N -0.65 -17.96 7.62 -500.46 -3.82 -21.78 16 18 C 0.03 0.93 6.47 86.45 0.56 1.49 16 19 H 0.06 1.77 6.11 -2.39 -0.01 1.75 16 20 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 21 H 0.02 0.88 6.90 -2.38 -0.02 0.86 16 22 H 0.40 21.09 7.57 -92.71 -0.70 20.39 16 23 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 24 H 0.07 2.42 7.70 -2.39 -0.02 2.40 16 25 H 0.10 3.11 7.98 -2.39 -0.02 3.09 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.35 7.69 8.92 -89.70 -0.80 6.89 16 29 H 0.09 2.99 5.98 -2.39 -0.01 2.97 16 30 H 0.05 2.02 6.79 -2.39 -0.02 2.00 16 Total: -1.00 -65.62 251.32 -0.44 -66.06 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.33 Total: 34.18 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.33 Total: 8.27 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.95 Total: -101.94 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -1.52 Total: -51.18 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -65.62 -0.44 -66.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707455680.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.504 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds