Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48500 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00398 * 3 2 1 6 6 H 1.48498 * 109.46908 * 59.99941 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00464 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47421 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47034 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00313 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47396 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47319 * 64.99884 * 14 13 12 16 16 C 1.42902 * 114.00186 * 180.02562 * 15 14 13 17 17 C 1.52995 * 117.49622 * 218.61892 * 16 15 14 18 18 C 1.52994 * 117.49857 * 149.99662 * 16 15 14 19 19 H 0.96996 * 119.99838 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46637 * 59.99495 * 9 7 2 21 21 H 1.08999 * 109.46635 * 300.00139 * 9 7 2 22 22 H 1.09007 * 109.47013 * 59.99979 * 10 9 7 23 23 H 1.08998 * 109.47287 * 300.00326 * 10 9 7 24 24 H 1.08999 * 109.47215 * 60.00489 * 11 10 9 25 25 H 1.08998 * 109.47516 * 300.00389 * 11 10 9 26 26 H 1.09001 * 109.46993 * 59.99365 * 13 12 11 27 27 H 1.09004 * 109.46505 * 300.00140 * 13 12 11 28 28 H 1.09002 * 109.47153 * 304.99576 * 14 13 12 29 29 H 1.09001 * 109.46832 * 184.99767 * 14 13 12 30 30 H 1.09002 * 115.54532 * 4.32983 * 16 15 14 31 31 H 1.08997 * 117.50686 * 0.02562 * 17 16 15 32 32 H 1.09003 * 117.49393 * 145.01845 * 17 16 15 33 33 H 1.08998 * 117.50151 * 214.98095 * 18 16 15 34 34 H 1.08998 * 117.49984 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4088 -6.0732 0.0018 13 6 1.7943 -7.3634 0.0018 14 6 2.8772 -8.4442 0.0031 15 8 3.6156 -8.3772 1.2247 16 6 4.6579 -9.3493 1.3279 17 6 4.8863 -9.9977 2.6948 18 6 5.8908 -8.9781 2.1544 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8906 23 1 2.8719 -3.6043 -0.8894 24 1 0.8533 -5.0452 -0.8886 25 1 0.8538 -5.0446 0.8913 26 1 1.1744 -7.4706 -0.8883 27 1 1.1738 -7.4702 0.8916 28 1 3.5514 -8.2840 -0.8383 29 1 2.4112 -9.4255 -0.0863 30 1 4.8121 -9.9688 0.4444 31 1 4.2412 -9.6832 3.5152 32 1 5.1906 -11.0443 2.7107 33 1 6.8561 -9.3537 1.8149 34 1 5.9071 -7.9922 2.6190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712031243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -82.248779 kcal Electronic energy + Delta-G solvation = -13701.299928 eV Core-core repulsion = 11213.983104 eV Total energy + Delta-G solvation = -2487.316824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.74867 -37.51521 -35.09488 -33.77680 -31.60079 -29.44067 -26.41542 -22.93648 -22.55381 -22.50953 -22.07297 -20.09059 -17.42596 -16.66979 -16.08348 -15.58646 -15.46049 -14.67688 -14.36935 -14.22882 -13.73317 -13.15334 -12.47330 -12.09873 -11.77715 -11.66648 -11.50276 -11.40627 -11.02822 -10.85549 -10.61962 -10.50238 -10.31318 -9.79495 -9.40884 -9.21588 -9.16122 -9.05102 -8.32843 -5.97991 -3.99844 3.33797 3.36394 3.40875 3.46142 3.67802 3.99884 4.49847 4.62126 4.78806 4.87893 5.09452 5.18758 5.29156 5.38079 5.38382 5.45802 5.56235 5.70090 5.77286 5.82015 5.92414 5.98292 6.25956 6.74609 6.77177 7.14269 7.14956 7.62128 7.70986 7.82888 8.02145 8.45541 9.07129 9.64087 11.13698 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048722 B = 0.004243 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.550471 B = 6597.689503 C = 7009.715692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.384 6.384 13 C 0.061 3.939 14 C 0.067 3.933 15 O -0.345 6.345 16 C 0.016 3.984 17 C -0.192 4.192 18 C -0.184 4.184 19 H 0.260 0.740 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -19.509 1.050 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.014 4.014 12 O -0.304 6.304 13 C -0.016 4.016 14 C -0.009 4.009 15 O -0.264 6.264 16 C -0.042 4.042 17 C -0.229 4.229 18 C -0.221 4.221 19 H 0.069 0.931 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.238 -19.219 1.190 20.241 hybrid contribution 0.096 0.713 -0.170 0.740 sum 6.334 -18.505 1.020 19.586 Atomic orbital electron populations 1.69977 1.06073 1.26493 1.51110 1.25033 0.94875 0.99324 0.95345 0.86506 0.80164 0.83639 0.77536 1.19670 1.21021 1.21010 1.21276 0.93199 0.90865 1.50263 0.92459 1.19058 0.93944 0.91122 0.97315 1.21641 0.99623 0.91721 1.01514 1.22788 0.92172 0.87053 0.99375 1.87962 1.34001 1.13069 1.95357 1.22433 0.94263 0.84195 1.00682 1.22617 0.93894 0.97243 0.87176 1.87961 1.46166 1.54042 1.38190 1.22639 0.91630 0.94885 0.95084 1.23385 1.03209 0.98154 0.98190 1.23325 0.93853 1.00916 1.04016 0.93069 0.96500 0.96460 0.92555 0.92650 0.93912 0.93825 0.91991 0.92802 0.92243 0.92003 0.87433 0.88204 0.88450 0.88295 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.41 5.52 -26.73 -0.15 -2.56 16 11 C 0.06 1.18 5.94 37.16 0.22 1.40 16 12 O -0.38 -7.01 10.31 -40.08 -0.41 -7.42 16 13 C 0.06 0.84 6.32 37.16 0.23 1.07 16 14 C 0.07 0.79 6.19 37.16 0.23 1.02 16 15 O -0.35 -4.87 10.56 -40.08 -0.42 -5.29 16 16 C 0.02 0.17 6.44 -26.74 -0.17 0.00 16 17 C -0.19 -1.78 10.48 -26.73 -0.28 -2.06 16 18 C -0.18 -1.83 10.48 -26.74 -0.28 -2.11 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.90 7.93 -51.93 -0.41 0.49 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -32.30 293.89 -7.31 -39.61 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.87 Total: -5.01 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.74 Total: -16.71 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.84 Total: -12.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.30 -7.31 -39.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712031243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds